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Emerging functions and roles of circRNAs in cancer

梅德林 血液学 医学 生物信息学 内科学 生物 图书馆学 肿瘤科 计算机科学 生物化学
作者
Xiang Hu,Xinyu Yang,Daoxin Ma
出处
期刊:Epigenomics [Future Medicine]
卷期号:14 (3): 113-116 被引量:4
标识
DOI:10.2217/epi-2021-0389
摘要

EpigenomicsVol. 14, No. 3 EditorialEmerging functions and roles of circRNAs in cancerXiang Hu, Xinyu Yang & Daoxin MaXiang HuDepartment of Hematology, Qilu Hospital of Shandong University, Jinan, Shandong, 250012, PR China, Xinyu YangDepartment of Hematology, Qilu Hospital of Shandong University, Jinan, Shandong, 250012, PR China & Daoxin Ma *Author for correspondence: Tel.: +86 0531 8216 9887; E-mail Address: daoxinma@sdu.edu.cnhttps://orcid.org/0000-0003-0664-8441Department of Hematology, Qilu Hospital of Shandong University, Jinan, Shandong, 250012, PR ChinaPublished Online:6 Dec 2021https://doi.org/10.2217/epi-2021-0389AboutSectionsView ArticleView Full TextPDF/EPUB ToolsAdd to favoritesDownload CitationsTrack CitationsPermissionsReprints ShareShare onFacebookTwitterLinkedInReddit View articleKeywords: cancercircRNAsexperimental challengesfusion circRNAsmiRNA spongesread-through circRNAsRNA-binding proteinstranslationPapers of special note have been highlighted as: • of interestReferences1. Goodall GJ, Wickramasinghe VO. RNA in cancer. Nat. Rev. Cancer 21(1), 22–36 (2021).Crossref, Medline, CAS, Google Scholar2. Rybak-Wolf A, Stottmeister C, Glazar P et al. Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed. Mol. Cell 58(5), 870–885 (2015).Crossref, Medline, CAS, Google Scholar3. You X, Vlatkovic I, Babic A et al. Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity. Nat. Neurosci. 18(4), 603–610 (2015).Crossref, Medline, CAS, Google Scholar4. Preusser C, Hung LH, Schneider T et al. Selective release of circRNAs in platelet-derived extracellular vesicles. J. Extracell. Vesicles 7(1), 1424473 (2018).Crossref, Medline, Google Scholar5. Nicolet BP, Engels S, Aglialoro F, Van Den Akker E, Von Lindern M, Wolkers MC. Circular RNA expression in human hematopoietic cells is widespread and cell-type specific. Nucleic Acids Res. 46(16), 8168–8180 (2018).Crossref, Medline, CAS, Google Scholar6. Salzman J, Gawad C, Wang PL, Lacayo N, Brown PO. Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. PLoS ONE 7(2), e30733 (2012). • Suggests that circRNA production can be a general feature of gene expression in human cells.Crossref, Medline, CAS, Google Scholar7. Vo JN, Cieslik M, Zhang Y et al. The landscape of circular RNA in cancer. Cell 176(4), 869–881.e13 (2019). • Generated the first database to be composed primarily of circRNAs directly detected in tumor tissues and defined read-through circRNAs (rt-circRNAs).Crossref, Medline, CAS, Google Scholar8. Li W, Zhong C, Jiao J et al. Characterization of hsa_circ_0004277 as a new biomarker for acute myeloid leukemia via circular RNA profile and bioinformatics analysis. Int. J. Mol. Sci. 18(3), 597 (2017).Crossref, Google Scholar9. Guarnerio J, Bezzi M, Jeong JC et al. Oncogenic role of fusion-circRNAs derived from cancer-associated chromosomal translocations. Cell 165(2), 289–302 (2016). • Found and defined fusion circRNAs (f-circRNAs) derived from the rearranged genome in cancer.Crossref, Medline, CAS, Google Scholar10. Liu J, Li D, Luo H, Zhu X. Circular RNAs: the star molecules in cancer. Mol. Aspects Med. 70, 141–152 (2019).Crossref, Medline, CAS, Google Scholar11. Han D, Li J, Wang H et al. Circular RNA circMTO1 acts as the sponge of microRNA-9 to suppress hepatocellular carcinoma progression. Hepatology 66(4), 1151–1164 (2017).Crossref, Medline, CAS, Google Scholar12. Hu ZQ, Zhou SL, Li J et al. Circular RNA sequencing identifies circASAP1 as a key regulator in hepatocellular carcinoma metastasis. Hepatology 72(3), 906–922 (2020).Crossref, Medline, CAS, Google Scholar13. Ding L, Zhao Y, Dang S et al. Circular RNA circ-DONSON facilitates gastric cancer growth and invasion via NURF complex dependent activation of transcription factor SOX4. Mol. Cancer 18(1), 45 (2019).Crossref, Medline, Google Scholar14. Li Q, Wang Y, Wu S et al. CircACC1 regulates assembly and activation of AMPK complex under metabolic stress. Cell Metab. 30(1), 157–173.e7 (2019).Crossref, Medline, Google Scholar15. Chen CK, Cheng R, Demeter J et al. Structured elements drive extensive circular RNA translation. Mol. Cell 81(20), 4300–4318.e13 (2021). • Identified circRNA internal ribosome entry site (IRES) elements that can direct circRNA translation by a high-throughput screen in human cells.Crossref, Medline, CAS, Google Scholar16. Liang WC, Wong CW, Liang PP et al. Translation of the circular RNA circbeta-catenin promotes liver cancer cell growth through activation of the Wnt pathway. Genome Biol. 20(1), 84 (2019).Crossref, Medline, Google Scholar17. Yang Y, Gao X, Zhang M et al. Novel role of FBXW7 circular RNA in repressing glioma tumorigenesis. J. Natl Cancer Inst. 110(3), 304–315 (2018).Crossref, CAS, Google Scholar18. Gao Y, Wang J, Zhao F. CIRI: an efficient and unbiased algorithm for de novo circular RNA identification. Genome Biol. 16, 4 (2015).Crossref, Medline, CAS, Google Scholar19. Szabo L, Morey R, Palpant NJ et al. Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development. Genome Biol. 16, 126 (2015).Crossref, Medline, Google Scholar20. Szabo L, Salzman J. Detecting circular RNAs: bioinformatic and experimental challenges. Nat. Rev. Genet. 17(11), 679–692 (2016).Crossref, Medline, CAS, Google Scholar21. Chen S, Huang V, Xu X et al. Widespread and functional RNA circularization in localized prostate cancer. Cell 176(4), 831–843.e22 (2019).Crossref, Medline, CAS, Google Scholar22. Li S, Li X, Xue W et al. Screening for functional circular RNAs using the CRISPR-Cas13 system. Nat. Methods 18(1), 51–59 (2021). • Used the clustered regularly interspaced short palindromic repeats (CRISPR)-Cas13 system to target circRNAs rather than their linear cognates.Crossref, Medline, Google ScholarFiguresReferencesRelatedDetails Vol. 14, No. 3 Follow us on social media for the latest updates Metrics Downloaded 71 times History Received 8 October 2021 Accepted 4 November 2021 Published online 6 December 2021 Published in print February 2022 Information© 2021 Future Medicine LtdKeywordscancercircRNAsexperimental challengesfusion circRNAsmiRNA spongesread-through circRNAsRNA-binding proteinstranslationFinancial & competing interests disclosureThe authors have no relevant affiliations or financial involvement with any organization or entity with a financial interest in or financial conflict with the subject matter or materials discussed in the manuscript. This includes employment, consultancies, honoraria, stock ownership or options, expert testimony, grants or patents received or pending or royalties.No writing assistance was utilized in the production of this manuscript.PDF download
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