Photobacterium arenosum sp. nov., isolated from marine sediment sand

生物 发光细菌 16S核糖体RNA 系统发育树 拉伤 微生物学 拟杆菌 细菌 基因 生物化学 遗传学 弧菌 解剖
作者
Veeraya Weerawongwiwat,Seokmin Yoon,Jong‐Hwa Kim,Jung‐Hoon Yoon,Jung Sook Lee,Ampaitip Sukhoom,Wonyong Kim
出处
期刊:International Journal of Systematic and Evolutionary Microbiology [Microbiology Society]
卷期号:71 (10) 被引量:9
标识
DOI:10.1099/ijsem.0.005034
摘要

A Gram-stain-negative, aerobic, motile, short rod-shaped, catalase-negative and oxidase-positive bacterium, strain CAU 1568 T , was isolated from marine sediment sand sampled at Sido Island in the Republic of Korea. The optimum conditions for growth were at 25–30 °C, at pH 6.5–8.5 and with 0–4.0 % (w/v) NaCl. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain CAU 1568 T was a member of the genus Photobacterium with high similarity to Photobacterium salinisoli JCM 30852 T (97.7 %), Photobacterium halotolerans KACC 17089 T (97.3 %) and Photobacterium galatheae LMG F28894 T (97.3 %). The predominant cellular fatty acids were C 16 : 0 , summed feature 3 (C 16 : 1 ω 6 c and/or C 16 : 1 ω 7 c ) and summed feature 8 (C 18 : 1 ω 7 c and/or C 18 : 1 ω 6 c ), with Q-8 as the major of isoprenoid quinone. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerols, phosphatidylcholine, phosphatidylethanolamine, phospholipid, two aminophospholipids and three unidentified lipids. The whole genome size of strain CAU 1568 T was 4.8 Mb with 50.1 mol% G+C content; including 38 contigs and 4233 protein-coding genes. These taxonomic data support CAU 1568 T as representing a novel Photobacterium species, for which the name Photobacterium arenosum sp. nov. is proposed. The type strain of this novel species is CAU 1568 T (=KCTC 82404 T =MCCC 1K05668 T ).
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