Harmful per- and polyfluoroalkyl substances (PFAS) are ubiquitously detected in aquatic environments, but their remediation remains challenging. Metal–organic frameworks (MOFs) have been recently identified as an advanced material class for the efficient removal of PFAS, but little is known about the fundamentals of the PFAS@MOF adsorption process. To address this knowledge gap, we evaluated the performance of 3 different MOFs for the removal of 8 PFAS classes from aqueous film-forming foam-impacted groundwater samples obtained from 11 U.S. Air Force installations. Due to their different pore sizes/shapes and the identity of metal node, MOFs NU-1000, UiO-66, and ZIF-8 were selected to investigate the role of MOF structures, PFAS properties, and water matrix on the PFAS@MOF adsorption process. We observed that PFAS@MOF adsorption is (i) dominated by electrostatic and acid–base interactions for anionic and non-ionic PFAS, respectively, (ii) preferred for long- over short-chain PFAS, (iii) strongly dependent on the nature of PFAS head group functionality, and (iv) compromised in the presence of ionic and neutral co-contaminants by competing for ion-exchange sites and PFAS binding. With this study, we elucidate the PFAS@MOF adsorption mechanism from complex water sources to guide the design of more efficient MOFs for the treatment of PFAS-contaminated water bodies.