Nanopore Probes Using Hydrogel-Filled Nanopipettes as Sensors for Chemical Imaging

Scanning ion conductance microscopy (SICM) using biological nanopores is a powerful analytical tool that can provide spatially resolved topography and chemical information. However, the low spatial resolution caused by the large tip diameter of the probe has limited the practical application of the SICM system. Although the tip-dip method has conventionally been used to form a lipid bilayer at the tip of pipettes, an alternative method to form the lipid bilayer is required because the lifetime of lipid bilayers formed by the tip-dip method is too short to map chemical information by stochastic nanopore sensing. Here, we propose a method to prepare lipid bilayers using a hydrogel-filled nanopipette. The lipid bilayer is formed at the tip of the pipette by inserting the pipette into a layered solution of an oil/lipid mixture and an aqueous electrolyte. Since the hydrogel supports the lipid bilayer, the lifetime of the lipid bilayers prepared by this method is improved over that formed by the tip-dip method. Furthermore, the hydrogel at the pore aperture reduces the translocation speed of analytes through nanopores, indicating that the hydrogel-filled nanopipette system can offer highly sensitive chemical sensing. Finally, we measure local single-strand deoxyribonucleic acid concentrations in the concentration gradient generated by a microhole using the biological nanopore probe. We believe that the SICM system using the hydrogel-filled nanopipette-based biological nanopore probe will offer a powerful analytical system for biological phenomena, including cell communication and signal transduction.