Chromosome‐level genomic assembly and allergome inference reveal novel allergens in Tyrophagus putrescentiae

嗜酪蛋白 推论 染色体 表(数据库) 生物 遗传学 计算生物学 计算机科学 人工智能 基因 数据挖掘 植物
作者
Ying Zhou,Pavel B. Klimov,Xue‐Ping Gu,Zhiwei Yu,Xiaochuan Cui,Qingqing Li,Ruilin Pan,Cunyin Yuan,Fangfang Cai,Yubao Cui
出处
期刊:Allergy [Wiley]
卷期号:78 (6): 1691-1695 被引量:7
标识
DOI:10.1111/all.15656
摘要

AllergyVolume 78, Issue 6 p. 1691-1695 LETTER Chromosome-level genomic assembly and allergome inference reveal novel allergens in Tyrophagus putrescentiae Ying Zhou, Ying Zhou Department of Pediatrics Laboratory, The Affiliated Wuxi Children's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorPavel B. Klimov, Pavel B. Klimov Department of Biological Sciences, Purdue University, West Lafayette, Indiana, USASearch for more papers by this authorXiaohong Gu, Xiaohong Gu Department of Respiratory, The Affiliated Wuxi Children's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorZhiwei Yu, Zhiwei Yu Department of Respiratory, The Affiliated Wuxi Children's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorXiaochuan Cui, Xiaochuan Cui Department of General Medicine, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorQingqing Li, Qingqing Li Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorRuilin Pan, Ruilin Pan Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorCunyin Yuan, Cunyin Yuan Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorFangfang Cai, Fangfang Cai Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorYubao Cui, Corresponding Author Yubao Cui [email protected] orcid.org/0000-0001-7736-8012 Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, China Correspondence Yubao Cui, Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, No. 299 at Qingyang Road, Wuxi 214023, China. Email: [email protected]Search for more papers by this author Ying Zhou, Ying Zhou Department of Pediatrics Laboratory, The Affiliated Wuxi Children's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorPavel B. Klimov, Pavel B. Klimov Department of Biological Sciences, Purdue University, West Lafayette, Indiana, USASearch for more papers by this authorXiaohong Gu, Xiaohong Gu Department of Respiratory, The Affiliated Wuxi Children's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorZhiwei Yu, Zhiwei Yu Department of Respiratory, The Affiliated Wuxi Children's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorXiaochuan Cui, Xiaochuan Cui Department of General Medicine, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorQingqing Li, Qingqing Li Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorRuilin Pan, Ruilin Pan Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorCunyin Yuan, Cunyin Yuan Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorFangfang Cai, Fangfang Cai Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, ChinaSearch for more papers by this authorYubao Cui, Corresponding Author Yubao Cui [email protected] orcid.org/0000-0001-7736-8012 Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, China Correspondence Yubao Cui, Clinical Research Center, The Affiliated Wuxi People's Hospital of Nanjing Medical University, No. 299 at Qingyang Road, Wuxi 214023, China. Email: [email protected]Search for more papers by this author First published: 25 January 2023 https://doi.org/10.1111/all.15656Citations: 3Read the full textAboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onEmailFacebookTwitterLinkedInRedditWechat Supporting Information Filename Description all15656-sup-0001-FigureS1.jpgimage/jpp, 3.1 MB Figure S1 all15656-sup-0002-FigureS2.jpgimage/jpp, 3.5 MB Figure S2 all15656-sup-0003-TablesS1-S7.pdfPDF document, 196.8 KB Table S1–S7 all15656-sup-0004-Supinfo.pdfPDF document, 189.5 KB Data S1 Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article. REFERENCES 1Cui Y, Yu L, Teng F, et al. Transcriptomic/proteomic identification of allergens in the mite Tyrophagus putrescentiae. Allergy. 2016; 71(11): 1635-1639. 10.1111/all.12999 CASPubMedWeb of Science®Google Scholar 2Zhou Y, Li Q, Pan R, et al. Regulatory roles of three miRNAs on allergen mRNA expression in Tyrophagus putrescentiae. Allergy. 2022; 77(2): 469-482. 10.1111/all.15111 CASPubMedWeb of Science®Google Scholar 3Arlian LG, Geis DP, Vyszenski-Moher DL, Bernstein IL, Gallagher JS. Antigenic and allergenic properties of the storage mite Tyrophagus putrescentiae. J Allergy Clin Immunol. 1984; 74(2): 166-171. 10.1016/0091-6749(84)90281-1 CASPubMedWeb of Science®Google Scholar 4Chan TF, Ji KM, Yim AK, et al. The draft genome, transcriptome, and microbiome of Dermatophagoides farinae reveal a broad spectrum of dust mite allergens. J Allergy Clin Immunol. 2015; 135(2): 539-548. 10.1016/j.jaci.2014.09.031 CASPubMedWeb of Science®Google Scholar 5Liu XY, Yang KY, Wang MQ, et al. High-quality assembly of Dermatophagoides pteronyssinus genome and transcriptome reveals a wide range of novel allergens. J Allergy Clin Immunol. 2018; 141(6): 2268-2271.e8. 10.1016/j.jaci.2017.11.038 CASPubMedWeb of Science®Google Scholar 6Xiong Q, Wan Angel T, Liu XY, et al. 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Der p 11 is a major allergen for house dust mite allergic patients suffering from atopica dermatitis. J Invest Dermatol. 2015; 135(1): 102-109. 10.1038/jid.2014.271 CASPubMedWeb of Science®Google Scholar 11Ramos JD, Cheong N, Lee BW, Chua KY. cDNA cloning and expression of Blo t 11, the Blomia tropicalis allergen homologous to paramyosin. Int Arch Allergy Immunol. 2001; 126(4): 286-293. 10.1159/000049525 CASPubMedWeb of Science®Google Scholar 12Xing P, Yu H, Li M, et al. Characterization of arginine kinase, a novel allergen of Dermatophagoides farinae (Der f 20). Am J Transl Res. 2015; 7(12): 2815-2823. CASPubMedWeb of Science®Google Scholar 13Sarzsinszky E, Lupinek C, Vrtala S, et al. Expression in Escherichia coli and purification of folded rDer p 20, the arginine kinase from Dermatophagoides pteronyssinus: a possible biomarker for allergic asthma. Allergy Asthma Immunol Res. 2021; 13(1): 154-163. 10.4168/aair.2021.13.1.154 CASPubMedWeb of Science®Google Scholar 14Yu CH, Tsai JJ, Lin YH, Yu SJ, Liao EC. Identification the cross-reactive or species-specific allergens of Tyrophagus putrescentiae and development molecular diagnostic kits for allergic diseases. Diagnostics (Basel). 2020; 10(9): 665. 10.3390/diagnostics10090665 CASPubMedWeb of Science®Google Scholar Citing Literature Volume78, Issue6China IssueJune 2023Pages 1691-1695 ReferencesRelatedInformation
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