Time-course transcriptomics analysis reveals key responses of populus to salt stress

转录因子 非生物胁迫 转录组 细胞生物学 生物 光合作用 脱落酸 植物 抄写(语言学) 盐度 非生物成分 生物化学 生态学 基因 基因表达 语言学 哲学
作者
Ye Zhao,Kai‐Hua Jia,Yanting Tian,Kunjin Han,Yousry A. El‐Kassaby,Hao Yang,Huayu Si,Yuhan Sun,Yun Li
出处
期刊:Industrial Crops and Products [Elsevier]
卷期号:194: 116278-116278 被引量:15
标识
DOI:10.1016/j.indcrop.2023.116278
摘要

Salt stress is a ubiquitous abiotic stress in nature and seriously affect woody plants growth and development. To explore how woody plants respond to salt stress, we used RNA-seq technology, time-course transcriptomics analysis, and constructed time-ordered gene co-expression networks (TO-GCNs) to analyze this mechanism using the poplar clone '84 K′ as the research object. Salt stress could increase the relative conductivity and plants damage degree, accumulate reactive oxygen species and malondialdehyde, decrease photosynthesis. In the constructed TO-GCNs, we divided the differentially expressed genes obtained by RNA-seq into six levels corresponding to the processing time points. Subnetworks containing transcription and non-transcription factors in photosynthesis, hyperosmotic salinity response, flavonoid biosynthesis process, abscisic acid (ABA)-activated signaling and cytokinin-activated signaling pathway were constructed, and the potential regulatory relationships between related genes and transcription factors were established. Thus, the potential regulatory mechanisms of transcription factors and response pathways were predicted. The results confirmed the regulation mechanism of woody plants under salt stress and revealed the potential regulatory relationship between transcription factors and response mechanisms in this process.
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