This study developed and validated an analytical method for simultaneous identification and quantification of 41 veterinary drugs in honey using liquid liquid extraction (LLE) and liquid chromatography coupled to quadrupole-Orbitrap high-resolution mass spectrometry (LC-Q-Orbitrap HRMS). The method was validated in accordance with Commission Implementing Regulation (CIR) EU 2021/808 at five different concentrations ranging from 0.075 to 50 μg/kg. The mean recoveries ranged from 70 to 105, while repeatability values were all below 17%. The linearity, as correlation coefficients (R2) ranged from 0.994 to 1. The limits of detection (LOD) and limits of quantification (LOQ) were in the range of 0.006–3.92 μg/kg and 0.011–6.54 μg/kg, respectively. The decision limit (CCα) and detection capability (CCβ) ranges were 0.0759–5.33 µg/kg and 0.0804–6.08 µg/kg, respectively. Of the 263 honey samples that were collected from local markets in Egypt, 47.5% had antibiotic residues. The mean concentration (µg/kg) and detection frequency (%) of the five most frequently detected antibiotics in the honey samples were as follows: trimethoprim (143.25 µg/kg and 39.9%), sulfamethoxazole (136.69 µg/kg and 30.7%), sulphadiazine (77.19 µg/kg and 18.6%), tylosin (184.37 µg/kg and 18.2%), and ciprofloxacin (185.33 µg/kg and 7.60%). The applicability of the developed method was proven through successful three proficiency testing (PT). The proposed method was demonstrated to be reliable for the simultaneous analysis of multi-class veterinary drugs in honey.