DNA storage is expected to tackle the dilemma faced by electronic information technology for the effective storage and management of massive amounts of data in the era of big data. Efficient and reliable data retrieval is crucial for DNA storage. However, it is still challenging to actualize DNA storage with fast and accurate readout capabilities, which play a key role in the practicality and reliability of DNA storage. In this study, an integrated system was constructed using homemade microfluidic PCR and DNA magnetic beads for fast and accurate DNA storage and reading with reproducibility. The homemade microfluidic PCR and DNA magnetic beads constructed for the random access of DNA storage have the advantages of short time and low bias named MMBP. The homemade DNA magnetic beads are low cost, stable, and reproducible. The integrated DNA storage and reading system integrated by MMBP can read information not only more accurately and quickly but also at a lower sequencing depth than traditional PCR. Overall, the MMBP-based DNA information storage system (MMBP-DIS) has the advantages of reducing the cost, decreasing the random access time to 10 min, and improving the reading accuracy and sensitivity. In the future, it can be integrated with DNA electrochemical synthesis to develop a fast and accurate portable microfluidic device for DNA synthesis-preservation-reading integration.