Both hospital effluent and a model sewage treatment plant (STP) wastewater prepared by mixing STP influent and STP secondary effluent at a volume ratio of 1:9 were directly treated with chlorine for investigation of their effects on disinfection of antimicrobial-resistant bacteria (AMRB) and antimicrobial-susceptible bacteria (AMSB). The overall results indicate that the chlorine disinfection effectively inactivated the majority of AMRB and AMSB, expect for MRSA and Staphylococcus aureus in both wastewaters. No significant differences could further be observed in the taxonomic diversity of micro-organisms after the treatment. The degrees of disinfection given by the direct chlorination were comparable to those attained by combination of conventional activated sludge process and additional chlorine treatment at the STP. The results of this study evoked a recommendation to operate local chlorination treatment directly for the wastewater from medicinal facilities prior to its flow into the STP as sewage. Although additional disinfection treatment at the STP seems necessary to remove the recalcitrant MRSA and Staphylococcus aureus , the present study desirably contributes to a great reduction of the loads of STP and urgent prevention of spreading of infectious diseases in the present state. • Direct chlorination of wastewater from hospital was be effective for disinfection. • Direct chlorination of wastewater from STP was also effective for disinfection. • Disinfection of six classes of AMRB by chlorination was clearly attained. • Disinfection of AMSB by chlorination was also clearly attained. • Notable change in bacterial community structure didn't occur by direct chlorination.