Identification of novel biomarkers of ferroptosis involved in keloid based on bioinformatics analysis

瘢痕疙瘩 小桶 基因 微阵列分析技术 微阵列 生物标志物 医学 计算生物学 纤维化 生物信息学 基因表达 癌症研究 遗传学 生物 病理 基因本体论
作者
Yuan Tian,Meijia Li,Rong Cheng,Yuan Jian,Lijun Hao
出处
期刊:International Wound Journal [Wiley]
卷期号:21 (1)
标识
DOI:10.1111/iwj.14606
摘要

Abstract Keloid is a fibroproliferative disease of unknown aetiology, which has a significant impact the quality of life of patients. Ferroptosis plays an important role in the occurrence and development of fibrosis, but there is still a lack of research related to keloids. The objective of this work was to identify the hub genes related to ferroptosis in keloid to better understand the keloid process. The microarray data (GSE7890 GSE145725, and GSE44270) (23 keloid and 22 normal fibroblast) were analysed via the gene expression comprehensive database (GEO). Only GSE7890 met the FerrDB database. Cell cycle and pathway analysis were performed with gene ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis was performed to differentially expressed genes (DEG). The differential genes were confirmed in other GEO datasets (GSE145725 and GSE44270), and multi‐fibrosis‐gene correlation analysed. To validate these hub genes, quantitative real‐time PCR (qRT‐PCR) was conducted. A total of 581 DEGs were screened, with 417 genes down‐regulated and 164 genes up‐regulated, with 11 ferroptosis genes significantly up‐regulated in both keloid and normal tissue, and 6 genes are consistent with our findings and are associated with multiple fibrosis genes. The qRT‐PCR results and tissues of normal skin and keloid agreed with our predictions. Our findings provide new evidence for the ferroptosis‐related molecular pathways and biomarker of keloid.

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