To ensure the aperture consistency of the stepped hole in the drilling of braided carbon fiber reinforced polyether ether ketone (BCF/PEEK) and PEEK stacks, a step variation parameter method is proposed to obtain the optimum process parameters in this study. Initially, the lay-up sequence is determined by analyzing diameter differences in drilled sequences of BCF/PEEK and PEEK stacks. Concurrently, hole-wall surface morphology and damage are observed under traditional drilling conditions to define stepped hole phenomena. Subsequently, optimum step position is identified by analyzing diameter differences at various positions with variable parameters. Moreover, the influence weight of drilling parameters on diameter difference is assessed using Taguchi orthogonal array. An optimization process scheme is proposed for minimum diameter difference control. Results suggest spindle speed of 2000 r/min and feed rate of 40mm/min for BCF/PEEK, and 5000 r/min and 30 mm/min for PEEK are optimum parameters. This method holds promise for achieving consistent apertures in other laminated composites during drilling.