Excess-electron capture and energy transfer to bulk water for aqueous DNA nucleotide

水溶液 DNA 电子俘获 核苷酸 电子转移 化学 化学物理 光化学 物理化学 生物化学 有机化学 离子 基因
作者
Yan Zhang,Xuanning Chen,Shuhui Yin,Yinhua Ma,Songqiu Yang
出处
期刊:Physical Chemistry Chemical Physics [Royal Society of Chemistry]
卷期号:25 (1): 471-477 被引量:3
标识
DOI:10.1039/d2cp03592h
摘要

We performed QM/MM simulations to investigate excess-electron attachment to four aqueous DNA nucleotide anions (dRT-). The negative QM/MM vertical electron affinities (-0.86 to -0.59 eV) reveal that aqueous dRT- anions improbably capture the excess electron near 0 eV. Comparing with the calculations in the gas phase and without the background charges, it can be found that first-shell water molecules have a larger contribution to the promotion of the ability of the excess-electron capture and the bulk-water polarization has a small effect on vertical electron affinities. The phosphate group hampers the attachment of the very low-energy excess electron to aqueous dRT-. The large adiabatic electron affinities (1.45-1.96 eV) and vertical detachment energies (1.92-2.44 eV) reveal that stable dRT2- dianions could be formed after dRT- anions catch the higher-energy excess electron (>0.59 eV). We computed the energy changes in the dRT2- structural relaxations. The QM-region conformational changes cause small energy alterations (-0.28 to 0.35 eV). The QM/MM energy decreases are 2.31-2.73 eV which mainly come from QM computations (3.49-4.00 eV) embedded in the background charges. The analysis of excess-electron distributions indicates that the polarization of bulk water and structural relaxations of dianions induce the excess-electron redistributions in the QM region and produce large QM-energy decreases. The MM energy changes are -1.27 to -1.11 eV for four aqueous dianions. The negative values demonstrate that the energy of the MM region would increase in dRT2- structural relaxations. In contrast with the values of the polarized QM computations, about 30% of the energy released by the QM region is transferred to bulk water in the MM region. The large energy dissipation probably suppresses DNA damage by the low-energy electron.
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