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A comprehensive analysis of single-cell RNA transcriptome reveals unique SPP1+ chondrocytes in human osteoarthritis

转录组 软骨细胞 骨关节炎 软骨 计算生物学 机制(生物学) RNA序列 生物 生物信息学 医学 基因表达 基因 遗传学 解剖 病理 认识论 哲学 替代医学
作者
Yunkun Qu,Ying-Guang Wang,Shanxi Wang,Xiaojun Yu,Yi He,Rui Lu,Sheng Chen,Meng Cheng,Hanqing Xu,Wenbin Pei,Bowei Ni,Rui Zhang,Xiaojian Huang,Hongbo You
出处
期刊:Computers in Biology and Medicine [Elsevier]
卷期号:160: 106926-106926 被引量:12
标识
DOI:10.1016/j.compbiomed.2023.106926
摘要

Osteoarthritis (OA) has become the most common degenerative disease in the world, which brings a serious economic burden to society and the country. Although epidemiological studies have shown that the occurrence of osteoarthritis is associated with obesity, sex, and trauma, the biomolecular mechanisms for the development and progression of osteoarthritis remain ambiguous. Several studies have drawn a connection between SPP1 and osteoarthritis. SPP1 was first found to be highly expressed in osteoarthritic cartilage, and later more studies have shown that SPP1 is also highly expressed in subchondral bone and synovial in OA patients. However, the biological function of SPP1 remains unclear. Single-cell RNA sequencing (scRNA-seq) is a novel technique that reflects gene expression at the cellular level, making it better depict the state of different cells than ordinary transcriptome data. However, most of the existing chondrocyte scRNA-seq studies focus on the occurrence and development of OA chondrocytes and lack analysis of normal chondrocyte development. Therefore, to better understand the mechanism of OA, scRNA-seq analysis of a larger cell volume containing normal and osteoarthritic cartilage is of great importance. Our study identifies a unique cluster of chondrocytes characterized by high SPP1 expression. The metabolic and biological characteristics of these clusters were further investigated. Besides, in animal models, we found that the expression of SPP1 is spatially heterogeneous in cartilage. Overall, our work provides novel insight into the potential role of SPP1 in OA, which sheds light on understanding the role of SPP1 in OA, promoting the progress of the treatment and prevention in the field of OA.
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