Abstract The temperature sensitivity ( Q 10 ) of soil organic C (SOC) decomposition is an important parameter to predict C dynamics under climate change. Given that SOC is mainly protected by aggregates and minerals, differentiating the Q 10 of the two C fractions helps to explain bulk soil C dynamics. In the present study, we collected agricultural soils from adjacent paddy and upland areas in mid‐temperate (Mollisols) and subtropic (Ultisols) regions of China. We employed density fractionation to separate aggregate‐protected and free mineral‐associated C fractions of soil samples and determined the Q 10 of SOC and the two C fractions at 15 and 25°C incubated conditions. Results showed that the Q 10 of SOC for Mollisols were lower than that for Ultisols, with an exception of aggregates in upland soils. Aggregate‐protected C had lower Q 10 than free mineral‐associated C, except in the upland Mollisols. The Q 10 of SOC was negatively correlated with the proportion of C protected in aggregates, whereas it was positively correlated with the proportions of mass or C of free minerals. Given that the mass and C proportion of aggregates in bulk soils of Mollisols were 271% and 80% higher than of Ultisols, respectively, the SOC of Mollisols exhibited lower Q 10 than Ultisols. Therefore, stronger soil aggregation and higher proportion of aggregate‐protected C contributed to the lower temperature sensitivity of SOC in Mollisols. Consequently, agricultural practices aimed at promoting soil aggregation will alleviate SOC loss under future global warming scenarios.