methylclock: a Bioconductor package to estimate DNA methylation age.
R包
计算机科学
甲基化
CpG站点
亚硫酸氢盐测序
作者
Dolors Pelegí-Sisó,Paula de Prado,Justiina Ronkainen,Mariona Bustamante,Juan R. González
出处
期刊:Bioinformatics [Oxford University Press] 日期:2021-07-19卷期号:37 (12): 1759-1760被引量:5
标识
DOI:10.1093/bioinformatics/btaa825
摘要
Motivation Ageing is a biological and psychosocial process related to diseases and mortality. It correlates with changes in DNA methylation (DNAm) in all human tissues. Therefore, epigenetic markers can be used to estimate biological age using DNAm profiling across tissues. Results We developed a Bioconductor package that allows computation of several existing DNAm adult/childhood and gestational age clocks. Functions to visualize the DNAm age prediction versus chronological age and the correlation between DNAm clocks are also available as well as other features, such as missing data imputation of cell types' estimates, that are required for DNAm age clocks. Availability and implementation https://github.com/isglobal-brge/methylclock. Supplementary information Supplementary data are available at Bioinformatics online.