Biomineralisation technology shows promise for sealing subsurface fractures, but understanding its microscale mechanisms in real rock fractures remains incomplete. In this study, a microfluidic chip incorporating real rock slices was utilised to conduct enzymatically induced carbonate precipitation (EICP) experiments using a one-phase continuous injection strategy. Real-time observations revealed grey flocs forming and clustering into aggregates susceptible to transport by flow. Calcium carbonate (CaCO 3 ) crystals that formed on rock and polydimethylsiloxane surfaces effectively filled and bridged fractures, leading to a significant pressure drop. Rough surfaces can provide additional sites for solute attachment and heterogeneous nucleation of calcium carbonate. High velocities and small apertures generally promoted floc formation and reduced crystal growth. Precipitation content gradually increased with a decreasing rate. Lower estimated precipitation efficiency was obtained in smaller, high-flow fractures. Precipitates on rock interfaces induced eddies and significant pressure drops within narrow pore throats. Crystal growth displayed a two-stage development: an initial increase followed by a decrease, varying across different facets (the surfaces or orientations of the growing crystals). Growth competition will occur when two or more neighbouring crystals come into contact with diverse grain orientations. The findings provide valuable microscale insights into microscale processes governing EICP within real rock fractures, contributing to evaluation of its efficacy in subsurface fracture sealing applications.