An effective disease diagnostic model related to pyroptosis in ischemic cardiomyopathy

上睑下垂 免疫系统 基因 Lasso(编程语言) 计算生物学 生物 疾病 医学 生物信息学 免疫学 遗传学 计算机科学 病理 炎症 万维网 炎症体
作者
Zhankui Jin,Fuqiang Liu,Guoan Zhang,Jingtao Zhang,Xiangrong Zhao,Xueping Huo,Xiaoyan Huang,Cuixiang Xu
出处
期刊:Journal of Cellular and Molecular Medicine [Wiley]
卷期号:27 (23): 3816-3826 被引量:1
标识
DOI:10.1111/jcmm.17957
摘要

Abstract Pyroptosis is involved in ischemic cardiomyopathy (ICM). The study aimed to investigate the pyroptosis‐related genes and clarify their diagnostic value in ICM. The bioinformatics method identified the differential pyroptosis genes between the normal control and ICM samples from online datasets. Then, protein–protein interaction (PPI) and function analysis were carried out to explore the function of these genes. Following, subtype analysis was performed using ConsensusClusterPlus, functions, immune score, stromal score, immune cell proportion and human leukocyte antigen (HLA) genes between subtypes were investigated. Moreover, optimal pyroptosis genes were selected using the least absolute shrinkage and selection operator (LASSO) analysis to construct a diagnostic model and evaluate its effectiveness using receiver operator characteristic (ROC) analysis. Twenty‐one differential expressed pyroptosis genes were identified, and these genes were related to immune and pyroptosis. Subtype analysis identified two obvious subtypes: sub‐1 and sub‐2. And LASSO identified 13 optimal genes used to construct the diagnostic model. The diagnostic model in ICM diagnosis with the area under ROC (AUC) was 0.965. Our results suggested that pyroptosis was tightly associated with ICM.

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
绿色催化完成签到,获得积分10
刚刚
CodeCraft应助777采纳,获得10
刚刚
metaphysic完成签到,获得积分10
1秒前
4秒前
小浪矢完成签到,获得积分10
5秒前
随风发布了新的文献求助10
5秒前
水水的完成签到 ,获得积分10
6秒前
777完成签到,获得积分20
6秒前
7秒前
8秒前
9秒前
科目三应助decipher采纳,获得10
9秒前
xvan完成签到 ,获得积分10
9秒前
开心枣枣完成签到 ,获得积分10
10秒前
慕青应助小浪矢采纳,获得10
10秒前
万木春完成签到 ,获得积分10
12秒前
orixero应助1783332789采纳,获得10
12秒前
maomao201026完成签到,获得积分10
13秒前
CipherSage应助安河桥采纳,获得10
13秒前
ldh发布了新的文献求助10
13秒前
13秒前
zzd完成签到,获得积分20
15秒前
四喜丸子应助阿聪采纳,获得10
16秒前
乐空思应助阿聪采纳,获得100
16秒前
Kao应助阿聪采纳,获得10
16秒前
16秒前
Kao应助阿聪采纳,获得10
16秒前
方青松应助阿聪采纳,获得10
17秒前
赘婿应助清爽采纳,获得10
17秒前
19秒前
19秒前
19秒前
NexusExplorer应助科研通管家采纳,获得10
19秒前
李健应助科研通管家采纳,获得10
19秒前
1783332789完成签到,获得积分10
19秒前
Akim应助科研通管家采纳,获得10
20秒前
丘比特应助科研通管家采纳,获得30
20秒前
cqk123应助科研通管家采纳,获得10
20秒前
烟花应助科研通管家采纳,获得10
20秒前
情怀应助科研通管家采纳,获得10
20秒前
高分求助中
Markov Chain Monte Carlo 10000
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Common Foundations of American and East Asian Modernisation: From Alexander Hamilton to Junichero Koizumi 5000
Pediatric Dermoscopy Trichoscopy & Onychoscopy 2030
Matrix Methods in Data Mining and Pattern Recognition Second Edition 610
Handbuch Trainingswissenschaft – Trainingslehre 500
Additive Manufacturing Design and Applications (ASM Handbook, Volume 24A) 500
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 工程类 有机化学 化学工程 生物化学 计算机科学 内科学 物理 复合材料 催化作用 细胞生物学 无机化学 光电子学 物理化学 电极 基因
热门帖子
关注 科研通微信公众号,转发送积分 7576585
求助须知:如何正确求助?哪些是违规求助? 9156198
关于积分的说明 19587954
捐赠科研通 7160479
什么是DOI,文献DOI怎么找? 3265053
关于科研通互助平台的介绍 2430187
邀请新用户注册赠送积分活动 2255662