根际
生物
生态学
土壤微生物学
大块土
微生物群
群落结构
植物
功能多样性
基因组
细菌
土壤水分
基因
遗传学
作者
Yan Yan,Eiko E. Kuramae,Mattias de Hollander,Peter G. L. Klinkhamer,Johannes A. van Veen
出处
期刊:The ISME Journal
[Springer Nature]
日期:2016-08-02
卷期号:11 (1): 56-66
被引量:172
标识
DOI:10.1038/ismej.2016.108
摘要
We studied the impact of community diversity on the selection of bacterial communities in the rhizosphere by comparing the composition and the functional traits of these communities in soil and rhizosphere. Differences in diversity were established by inoculating into sterilized soils diluted suspensions of the same soil. We used 16S ribosomal RNA amplicon sequencing to determine the taxonomical structure of the bacterial communities and a shotgun metagenomics approach to investigate the potential functional diversity of the communities. By comparing the bacterial communities in soil and rhizosphere, the selective power of the plant was observed both at the taxonomic and functional level, although the diversity indices of soil and rhizosphere samples showed a highly variable, irregular pattern. Lesser variation, that is, more homogenization, was found for both the taxonomic structure and the functional profile of the rhizosphere communities as compared to the communities of the bulk soil. Network analysis revealed stronger interactions among bacterial operational taxonomic units in the rhizosphere than in the soil. The enrichment processes in the rhizosphere selected microbes with particular functional genes related to transporters, the Embden-Meyerhof-Parnas pathway and hydrogen metabolism. This selection was not random across bacteria with these functional traits, but it was species specific. Overall, this suggests that functional traits are a key to the assembly of bacterial rhizosphere communities.
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