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RNA-Sequencing Analysis Identification of Potential Biomarkers for Diagnosis of Sarcopenia

肌萎缩 计算生物学 鉴定(生物学) 医学 内科学 核糖核酸 生物 生物信息学 遗传学 基因 生态学
作者
Motoki Furutani,Mutsumi Suganuma,Shintaro Akiyama,Risa Mitsumori,Marie Takemura,Yasumoto Matsui,Shosuke Satake,Yukiko Nakano,Shumpei Niida,Kouichi Ozaki,Tohru Hosoyama,Daichi Shigemizu
出处
期刊:The Journals of Gerontology [Oxford University Press]
卷期号:78 (11): 1991-1998 被引量:3
标识
DOI:10.1093/gerona/glad150
摘要

Sarcopenia is a geriatric disease associated with increased mortality and disability. Early diagnosis and intervention are required to prevent it. This study investigated biomarkers for sarcopenia by using a combination of comprehensive clinical data and messenger RNA-sequencing (RNA-seq) analysis obtained from peripheral blood mononuclear cells. We enrolled a total of 114 older adults aged 66-94 years (52 sarcopenia diagnosed according to the Asian Working Group for Sarcopenia 2019 consensus and 62 normal older people). We used clinical data which were not included diagnosis criteria of sarcopenia, and stride length showed significance by logistic regression analysis (Bonferroni corrected p = .012, odds ratio = 0.14, 95% confidence interval [CI]: 0.05-0.40). RNA-seq analysis detected 6 differential expressed genes (FAR1, GNL2, HERC5, MRPL47, NUBP2, and S100A11). We also performed gene-set enrichment analysis and detected 2 functional modules (ie, hub genes, MYH9, and FLNA). By using any combination of the 9 candidates and basic information (age and sex), risk-prediction models were constructed. The best model by using a combination of stride length, HERC5, S100A11, and FLNA, achieved a high area under the curve (AUC) of 0.91 in a validation cohort (95% CI: 0.78-0.95). The quantitative PCR results of the 3 genes were consistent with the trend observed in the RNA-seq results. When BMI was added, the model achieved a high AUC of 0.95 (95% CI: 0.84-0.99). We have discovered potential biomarkers for the diagnosis of sarcopenia. Further refinement may lead to their future practical use in clinical use.
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