随机六聚体
结晶学
化学
锌
二聚体
离子
分子
单体
八面体
协调球
晶体结构
有机化学
聚合物
作者
G. David Smith,Walter Pangborn,R. H. Blessing
出处
期刊:Acta Crystallographica Section D-biological Crystallography
[International Union of Crystallography]
日期:2001-07-23
卷期号:57 (8): 1091-1100
被引量:24
标识
DOI:10.1107/s0907444901007685
摘要
The structure of T3R_3^{\rm f} hexameric human insulin has been determined at 100 K from two different crystals at 1.2 and 1.3 Å resolution and refined to residuals of 0.169 and 0.176, respectively. Owing to a phase change, the c axis is double its room-temperature value and the asymmetric unit contains two independent TRf insulin dimers. Compared with the orientation in the room-temperature structure, one dimer undergoes a rotation about the c axis of −5°, while the second is rotated +4°. A superposition of the backbone atoms of the two independent dimers shows that the Cα atoms of five residues within the Rf-state monomers are displaced by more than 1.0 Å; smaller displacements are observed for the T-state monomers. Four zinc ions lie on the crystallographic threefold axis and each forms bonds to three symmetry-related HisB10 Nɛ2 atoms from the T- and Rf-state trimers. While three of the zinc ions are tetrahedrally coordinated with a chloride ion completing the coordination sphere, mixed tetrahedral/octahedral coordination is observed for one of the T-state zinc ions. The three symmetry-related `phenolic binding sites' in one hexamer contain water molecules and a glycerol molecule, but the same sites in the second hexamer are occupied by a zinc ion coordinated to an alternate conformation of HisB10, a symmetry-related HisB5 and two chloride ions. Two additional and partially occupied zinc ion sites are observed at the interface between the two independent dimers. One zinc ion is coordinated by a T-state HisB5 of one dimer, an R-state HisB5 of the second dimer and two water molecules; the second zinc ion is coordinated by an alternate side-chain conformation of the T-state HisB5 and three water molecules. The carboxyl group of one GluB13 side chain, which exists in two discrete conformations, appears to be protonated, because short contacts exist to a second carboxyl group or to a carbonyl O atom.
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