Matrisomics: Beyond the extracellular matrix for unveiling tumor microenvironment

生物 蛋白质组学 表观遗传学 癌症 计算生物学 转录组 基因组学 癌症的体细胞进化 组学 肿瘤微环境 癌细胞 遗传学 生物信息学 DNA甲基化 基因 基因组 基因表达
作者
Jiwon Hong,Hyo Joon Jin,Mi‐Ran Choi,Wan‐Teck Lim,Jong‐Eun Park,You‐Sun Kim,Su Bin Lim
出处
期刊:Biochimica Et Biophysica Acta - Reviews On Cancer [Elsevier]
卷期号:1879 (6): 189178-189178
标识
DOI:10.1016/j.bbcan.2024.189178
摘要

The matrisome, a group of proteins constituting or interacting with the extracellular matrix (ECM), has garnered attention as a potent regulator of cancer progression. An increasing number of studies have focused on cancer matrisome utilizing diverse -omics approaches. Here, we present diverse patterns of matrisomal populations within cancer tissues, exploring recent -omics studies spanning different '-omics' levels (epigenomics, genomics, transcriptomics, and proteomics), as well as newly developed sequencing techniques such as single-cell RNA sequencing and spatial transcriptomics. Some matrisome genes showed uniform patterns of upregulated or downregulated expression across various cancers, while others displayed different expression patterns according to the cancer types. This matrisomal dysregulation in cancer was further examined according to their originating cell type and spatial location in the tumor tissue. Experimental studies were also collected to demonstrate the identified roles of matrisome genes during cancer progression. Interestingly, many studies on cancer matrisome have suggested matrisome genes as effective biomarkers in cancer research. Although the specific mechanisms and clinical applications of cancer matrisome have not yet been fully elucidated, recent techniques and analyses on cancer matrisomics have emphasized their biological importance in cancer progression and their clinical implications in deciding the efficacy of cancer treatment.

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