Whole-Genome Duplication and Plant Macroevolution

生物 宏观进化 基因复制 进化生物学 植物进化 基因组 系统发育学 植物科学 计算生物学 基因 遗传学 植物
作者
James Clark,Philip C. J. Donoghue
出处
期刊:Trends in Plant Science [Elsevier]
卷期号:23 (10): 933-945 被引量:286
标识
DOI:10.1016/j.tplants.2018.07.006
摘要

WGD events continue to be discovered throughout plant systematic diversity as a consequence of genome sequencing programs. The absolute timing of WGD events remains poorly constrained and poorly understood, but many hypotheses regarding the role of WGD in plant evolution depend on precise estimates. The role of WGD in facilitating diversification has a strong theoretical basis but remains to be rigorously tested, and WGD in species-poor lineages cannot be ignored. WGD as a driver of plant morphological diversity is an appealing hypothesis, but requires a framework which can quantify morphological variation between lineages and through time. Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of land plants. Unfortunately, the timings of WGD events are loosely constrained and hypotheses of evolutionary consequence are poorly formulated, making them difficult to test. Using examples from across the plant kingdom, we show that estimates of timing can be improved through the application of molecular clock methodology to multigene datasets. Further, we show that phenotypic change can be quantified in morphospaces and that relative phenotypic disparity can be compared in the light of WGD. Together, these approaches facilitate tests of hypotheses on the role of WGD in plant evolution, underscoring the potential of plants as a model system for investigating the role WGD in macroevolution. Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of land plants. Unfortunately, the timings of WGD events are loosely constrained and hypotheses of evolutionary consequence are poorly formulated, making them difficult to test. Using examples from across the plant kingdom, we show that estimates of timing can be improved through the application of molecular clock methodology to multigene datasets. Further, we show that phenotypic change can be quantified in morphospaces and that relative phenotypic disparity can be compared in the light of WGD. Together, these approaches facilitate tests of hypotheses on the role of WGD in plant evolution, underscoring the potential of plants as a model system for investigating the role WGD in macroevolution. sometimes termed fractionation, this is the period following WGD whereby through rearrangement, silencing, and loss of DNA the genome returns to a diploid expression pattern. an n-dimensional multivariate space describing phenotypes, where points represent taxonomic units and the distances between them their (dis)similarities. following gene duplication, one copy of the gene takes on a novel function while the other copy continues to perform the previous function. two genes related by descent, typically with similar sequences, are homologs. If they share a 1:1 relationship between species, they are orthologs. If they deviate from this 1:1 relationship as a result of a duplication event, they become paralogs. Paralogs that have derived specifically from a WGD event are termed ohnologs, after Susumu Ohno. following gene duplication, each duplicate performs part of the original function, and in combination both maintain the original function of the gene.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
更新
大幅提高文件上传限制,最高150M (2024-4-1)

科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
完美世界应助blablawindy采纳,获得30
刚刚
NexusExplorer应助wssf采纳,获得10
1秒前
1秒前
sun发布了新的文献求助30
2秒前
Hello应助慕辞采纳,获得10
3秒前
zzz发布了新的文献求助20
4秒前
脑洞疼应助橘络采纳,获得10
5秒前
缥缈涵菡完成签到,获得积分10
5秒前
萧水白应助冷酷豌豆采纳,获得10
6秒前
83366完成签到,获得积分10
6秒前
7秒前
心灵美绝施完成签到,获得积分10
8秒前
CipherSage应助blablawindy采纳,获得10
11秒前
CodeCraft应助Lijia_YAO采纳,获得10
11秒前
ACEmeng发布了新的文献求助10
12秒前
15秒前
卫绯发布了新的文献求助10
18秒前
MI发布了新的文献求助10
18秒前
19秒前
pixiu完成签到,获得积分10
19秒前
bhh发布了新的文献求助10
19秒前
早睡早起完成签到,获得积分20
20秒前
21秒前
半世完成签到,获得积分20
22秒前
24秒前
cyy发布了新的文献求助10
26秒前
李爱国应助看不懂采纳,获得10
27秒前
melo完成签到 ,获得积分10
28秒前
简单灵竹完成签到,获得积分10
28秒前
cc发布了新的文献求助10
29秒前
30秒前
30秒前
顾矜应助blablawindy采纳,获得30
32秒前
32秒前
33秒前
34秒前
35秒前
嗯哼应助sam采纳,获得10
35秒前
35秒前
JamesPei应助王不留行采纳,获得10
37秒前
高分求助中
The late Devonian Standard Conodont Zonation 2000
Nickel superalloy market size, share, growth, trends, and forecast 2023-2030 2000
The Lali Section: An Excellent Reference Section for Upper - Devonian in South China 1500
Very-high-order BVD Schemes Using β-variable THINC Method 870
Mantiden: Faszinierende Lauerjäger Faszinierende Lauerjäger 800
PraxisRatgeber: Mantiden: Faszinierende Lauerjäger 800
A new species of Coccus (Homoptera: Coccoidea) from Malawi 500
热门求助领域 (近24小时)
化学 医学 生物 材料科学 工程类 有机化学 生物化学 物理 内科学 纳米技术 计算机科学 化学工程 复合材料 基因 遗传学 催化作用 物理化学 免疫学 量子力学 细胞生物学
热门帖子
关注 科研通微信公众号,转发送积分 3256085
求助须知:如何正确求助?哪些是违规求助? 2898220
关于积分的说明 8300473
捐赠科研通 2567352
什么是DOI,文献DOI怎么找? 1394499
科研通“疑难数据库(出版商)”最低求助积分说明 652817
邀请新用户注册赠送积分活动 630511