计算机科学
数据提取
数据集
集合(抽象数据类型)
人口
工作流程
考试(生物学)
自然语言处理
数据挖掘
人工智能
统计
医学
梅德林
数据库
数学
生物
环境卫生
古生物学
程序设计语言
生物化学
作者
Muhammad Ali Khan,Umair Ayub,Syed Arsalan Ahmed Naqvi,Kaneez Zahra Rubab Khakwani,Zaryab bin Riaz Sipra,Ammad Raina,Sihan Zhou,Huan He,Amir Saeidi,Bashar Hasan,R. Bryan Rumble,Danielle S. Bitterman,Jeremy L. Warner,Jia Zou,Amyé Tevaarwerk,Konstantinos Leventakos,Kenneth L. Kehl,Jeanne Palmer,M. Hassan Murad,Chitta Baral,Irbaz Bin Riaz
标识
DOI:10.1093/jamia/ocae325
摘要
Abstract Objective Data extraction from the published literature is the most laborious step in conducting living systematic reviews (LSRs). We aim to build a generalizable, automated data extraction workflow leveraging large language models (LLMs) that mimics the real-world 2-reviewer process. Materials and Methods A dataset of 10 trials (22 publications) from a published LSR was used, focusing on 23 variables related to trial, population, and outcomes data. The dataset was split into prompt development (n = 5) and held-out test sets (n = 17). GPT-4-turbo and Claude-3-Opus were used for data extraction. Responses from the 2 LLMs were considered concordant if they were the same for a given variable. The discordant responses from each LLM were provided to the other LLM for cross-critique. Accuracy, ie, the total number of correct responses divided by the total number of responses, was computed to assess performance. Results In the prompt development set, 110 (96%) responses were concordant, achieving an accuracy of 0.99 against the gold standard. In the test set, 342 (87%) responses were concordant. The accuracy of the concordant responses was 0.94. The accuracy of the discordant responses was 0.41 for GPT-4-turbo and 0.50 for Claude-3-Opus. Of the 49 discordant responses, 25 (51%) became concordant after cross-critique, increasing accuracy to 0.76. Discussion Concordant responses by the LLMs are likely to be accurate. In instances of discordant responses, cross-critique can further increase the accuracy. Conclusion Large language models, when simulated in a collaborative, 2-reviewer workflow, can extract data with reasonable performance, enabling truly “living” systematic reviews.
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