The structure of bis(catecholato)silane has been subject to debate, as to whether it is its tetrahedral or planar Si(IV). To tackle the discussion, here, the bis(catecholato)silane molecules with visible molecular-level images on different metal surfaces are investigated by scanning tunneling microscopy (STM), X-ray photoelectron spectroscopy (XPS), and density functional theory (DFT) simulations. It is found that the bis(catecholato)silane shows a tetrahedral Si(IV) structure on both Au(111) and Ag(111) surfaces, while the bis(catecholato)silane can show a nearly planar Si(IV) structure on the Cu(111) surface due to the strong interaction between the SiO4 moiety and the metal surface. Naturally, the conformational difference results in the self-assembly and on-surface chemistry behaving differently. Furthermore, the coverage of bis(catecholato)silane influences the self-assembly structures, indicating that the interactions among organic molecules affect the molecular tetrahedral or planar conformations. Our study reveals fundamental knowledge of the bis(catecholato)silane molecules on a surface, especially the tetrahedral or planar Si(IV) selectivity influenced by the surface constraint.