Consumption of raw and semi-raw aquatic products is strongly associated with the development of fish-borne parasitic diseases. Detection of fish-borne parasites in aquatic products is of great significance for the prevention and control of fish-borne parasitic diseases. This review describes the advances in the application of etiological, molecular biological and immunological techniques alone and in combinations for detection of fish-borne parasites, so as to provide insights into detection of fish-borne parasites.