阴沟肠杆菌
肺炎克雷伯菌
多重耐药
传输(电信)
生物
系统发育树
感染控制
单核苷酸多态性
抗菌剂
抗药性
基因型
微生物学
医学
遗传学
基因
大肠杆菌
工程类
电气工程
病理
作者
Brekhna Hassan,Muhammad Ijaz,Asadullah Khan,Kirsty Sands,Georgios-Ion Serfas,Liam Clayfield,Maisra M. El‐Bouseary,Giulia Lai,Edward Portal,Afifah Khan,William J. Watkins,Julian Parkhill,Timothy R. Walsh
出处
期刊:Nature microbiology
日期:2021-09-27
卷期号:6 (10): 1259-1270
被引量:19
标识
DOI:10.1038/s41564-021-00965-1
摘要
Understanding how multidrug-resistant Enterobacterales (MDRE) are transmitted in low- and middle-income countries (LMICs) is critical for implementing robust policies to curb the increasing burden of antimicrobial resistance (AMR). Here, we analysed samples from surgical site infections (SSIs), hospital surfaces (HSs) and arthropods (summer and winter 2016) to investigate the incidence and transmission of MDRE in a public hospital in Pakistan. We investigated Enterobacterales containing resistance genes (blaCTX-M-15, blaNDM and blaOXA-48-like) for identification, antimicrobial susceptibility testing and whole-genome sequencing. Genotypes, phylogenetic relationships and transmission events for isolates from different sources were investigated using single-nucleotide polymorphism (SNP) analysis with a cut-off of ≤20 SNPs. Escherichia coli (14.3%), Klebsiella pneumoniae (10.9%) and Enterobacter cloacae (16.3%) were the main MDRE species isolated. The carbapenemase gene blaNDM was most commonly detected, with 15.5%, 15.1% and 13.3% of samples positive in SSIs, HSs and arthropods, respectively. SNP (≤20) and spatiotemporal analysis revealed linkages in bacteria between SSIs, HSs and arthropods supporting the One Health approach to underpin infection control policies across LMICs and control AMR. Flies, insects and spiders can serve as vectors of multidrug-resistant Enterobacterales in a public hospital in Pakistan, according to a clinical and molecular epidemiology study.
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