Efficient methods for finding transition states in chemical reactions: Comparison of improved dimer method and partitioned rational function optimization method

插值(计算机图形学) 鞍点 Lanczos重采样 功能(生物学) 数学 统计物理学 数学优化 计算化学 算法 物理 量子力学 化学 几何学 经典力学 运动(物理) 生物 进化生物学 特征向量
作者
Andreas Heyden,Alexis T. Bell,Frerich J. Keil
出处
期刊:Journal of Chemical Physics [American Institute of Physics]
卷期号:123 (22): 224101-224101 被引量:931
标识
DOI:10.1063/1.2104507
摘要

A combination of interpolation methods and local saddle-point search algorithms is probably the most efficient way of finding transition states in chemical reactions. Interpolation methods such as the growing-string method and the nudged-elastic band are able to find an approximation to the minimum-energy pathway and thereby provide a good initial guess for a transition state and imaginary mode connecting both reactant and product states. Since interpolation methods employ usually just a small number of configurations and converge slowly close to the minimum-energy pathway, local methods such as partitioned rational function optimization methods using either exact or approximate Hessians or minimum-mode-following methods such as the dimer or the Lanczos method have to be used to converge to the transition state. A modification to the original dimer method proposed by [Henkelman and Jónnson J. Chem. Phys. 111, 7010 (1999)] is presented, reducing the number of gradient calculations per cycle from six to four gradients or three gradients and one energy, and significantly improves the overall performance of the algorithm on quantum-chemical potential-energy surfaces, where forces are subject to numerical noise. A comparison is made between the dimer methods and the well-established partitioned rational function optimization methods for finding transition states after the use of interpolation methods. Results for 24 different small- to medium-sized chemical reactions covering a wide range of structural types demonstrate that the improved dimer method is an efficient alternative saddle-point search algorithm on medium-sized to large systems and is often even able to find transition states when partitioned rational function optimization methods fail to converge.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
ghhhn完成签到,获得积分10
刚刚
今后应助1111采纳,获得10
刚刚
wBw发布了新的文献求助10
1秒前
浅清完成签到,获得积分10
1秒前
scc发布了新的文献求助10
1秒前
ff发布了新的文献求助10
1秒前
偷书贼完成签到,获得积分10
1秒前
XU完成签到,获得积分10
2秒前
风轻云淡发布了新的文献求助10
2秒前
2秒前
lisbattery发布了新的文献求助10
3秒前
moshushan520完成签到,获得积分10
3秒前
Jasper应助尊敬薯片采纳,获得10
3秒前
张蒲喆发布了新的文献求助10
4秒前
4秒前
jouholly完成签到,获得积分10
4秒前
许译匀发布了新的文献求助10
5秒前
nicenicer发布了新的文献求助10
5秒前
笑点低蛋挞完成签到,获得积分10
5秒前
5秒前
小蘑菇应助danruolan采纳,获得10
6秒前
6秒前
6秒前
调皮芫完成签到,获得积分10
7秒前
无花果应助小王采纳,获得10
7秒前
7秒前
量子星尘发布了新的文献求助10
8秒前
AMOR完成签到,获得积分10
8秒前
ys1111xiao发布了新的文献求助10
8秒前
我是老大应助天天看文献采纳,获得10
8秒前
gyj完成签到,获得积分10
8秒前
星辰大海应助鲤鱼诗桃采纳,获得10
8秒前
埃塞克斯应助自由的白羊采纳,获得10
9秒前
9秒前
9秒前
无极微光应助王思远采纳,获得20
9秒前
桐桐应助隐形的文昊采纳,获得10
9秒前
Hello应助我爱学习采纳,获得10
9秒前
共享精神应助向日葵采纳,获得10
10秒前
科研通AI6.1应助许译匀采纳,获得10
10秒前
高分求助中
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Handbook of pharmaceutical excipients, Ninth edition 5000
Aerospace Standards Index - 2026 ASIN2026 3000
Signals, Systems, and Signal Processing 610
Discrete-Time Signals and Systems 610
Principles of town planning : translating concepts to applications 500
Modified letrozole versus GnRH antagonist protocols in ovarian aging women for IVF: An Open-Label, Multicenter, Randomized Controlled Trial 360
热门求助领域 (近24小时)
化学 材料科学 医学 生物 工程类 纳米技术 有机化学 物理 生物化学 化学工程 计算机科学 复合材料 内科学 催化作用 光电子学 物理化学 电极 冶金 遗传学 细胞生物学
热门帖子
关注 科研通微信公众号,转发送积分 6062726
求助须知:如何正确求助?哪些是违规求助? 7894873
关于积分的说明 16311469
捐赠科研通 5205975
什么是DOI,文献DOI怎么找? 2785113
邀请新用户注册赠送积分活动 1767749
关于科研通互助平台的介绍 1647426