miR‐542‐5p targets GREM1 to affect the progression of renal fibrosis

小桶 小RNA 生物 纤维化 微阵列分析技术 微阵列 下调和上调 基因 基因表达 转化生长因子 癌症研究 计算生物学 遗传学 细胞生物学 内科学 医学 基因本体论
作者
Shuting Pang,Boji Xie,Bingmei Feng,Guiling Xu,Qinglin Ye,Xuesong Chen,Liangping Ruan,Hong Chen,Shang‐Ling Pan,Chao Xue,Wei Li
出处
期刊:Journal of Biochemical and Molecular Toxicology [Wiley]
卷期号:38 (9)
标识
DOI:10.1002/jbt.23818
摘要

Abstract Renal fibrosis (RF) is a typical pathological presentation of end‐stage chronic kidney disease (CKD) and autosomal dominant polycystic kidney disease (ADPKD). However, the precise regulatory mechanisms governing this re‐expression process remain unclear. Differentially expressed microRNAs (miRNAs) associated with RF were screened by microarray analysis using the Gene Expression Omnibus (GEO) database. The miRNAs upstream of the genes in question were predicted using the miRWalk database. The miRNAs involved in the two GEO data sets were intersected to identify key miRNAs; their regulatory pathways were investigated using Gene Ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. Subsequently, the effects and the underlying mechanisms of target miRNA on RF were examined in a unilateral ureteral obstruction (UUO)‐induced mice renal fibrotic model and a transforming growth factor‐β1 (TGF‐β1)‐induced tubular epithelium (HK‐2) fibrotic cell model. In total, 109 and 32 differentially expressed miRNAs were identified in the GSE133530 and GSE80247 data sets, respectively. GREM1 was identified as a hub gene, where its 2196 upstream miRNAs were predicted; miR‐574‐5p was found to be downregulated and closely related to fibrosis after data set intersection and enrichment analyses, thus was selected for further investigation. A differential expression heatmap (GSE162794) showed that miR‐542‐5p was downregulated. The expression of GREM1 mRNA was upregulated, whereas that of miR‐542‐5p was downregulated in UUO mice and fibrotic HK‐2 cells as compared with the relevant controls. The binding site of miR‐542‐5p was predicted at the 3'UTR region of GREM1 and was confirmed by subsequent dual luciferase reporter gene assay. Western blot analysis showed that Gremlin‐1 and Fibronectin were significantly upregulated after induction of TGF‐β1; when miR‐542‐5p was overexpressed or GREM1 mRNA was interfered, the upregulations of Gremlin‐1 and Fibronectin were significantly reduced. Our research demonstrates that miR‐542‐5p plays a critical role in the progression of RF, and thus may be a promising therapeutic target for CKD and ADPKD.
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