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Bioinformatics and experimental validation were combined to explore lactylation‐related biomarkers in HBV‐associated acute liver failure

基因 候选基因 免疫系统 乙型肝炎病毒 基因表达 医学 基因表达谱 计算生物学 缬氨酸 生物 免疫学 病毒 遗传学 氨基酸
作者
Hao Pei,Yue‐qiao Chen,Feng‐lan Wu,Yan‐Yan Zhang,Xue Zhang,Jian‐yu Li,Li‐yi Pan,Yu Chen,Yu‐wen Huang
出处
期刊:Journal of Gastroenterology and Hepatology [Wiley]
标识
DOI:10.1111/jgh.16739
摘要

Abstract Background and Aim Currently, hepatitis B virus‐related acute liver failure (HBV‐ALF) has limited treatment options. Studies have shown that histone lactylation plays a role in the progression of liver‐related diseases. Therefore, it is essential to explore lactylation‐related gene (LRGs) biomarkers in HBV‐ALF to provide new information for the treatment of HBV‐ALF. Methods Two HBV‐ALF‐related datasets (GSE38941 and GSE14668) and 65 LRGs were used. First, the differentially expressed genes (DEGs) were derived from differential expression analysis, the key module genes from weighted gene co‐expression network analysis; and LRGs were used to intersect to obtain the candidate genes. Subsequently, the feature genes obtained from least absolute shrinkage and selection operator regression analysis and support vector machine analysis were intersected to obtain the candidate key genes. Among them, genes with consistent and significant expression trends in both GSE38941 and GSE14668 were used as biomarkers. Subsequently, biomarkers were analyzed for functional enrichment, immune infiltration, and sensitive drug prediction. Results In this study, five candidate genes ( PIGM , PIGA , EGR1 , PIGK , and PIGL ) were identified by intersecting 6461 DEGs and 2496 key module genes with 65 LRGs. We then screened four candidate key genes from the machine learning algorithm, among which PIGM and PIGA were considered biomarkers in HBV‐ALF. Moreover, the results of enrichment analysis showed that the significant enrichment signaling pathways for biomarkers included allograft rejection and valine, leucine, and isoleucine degradation. Thereafter, 11 immune cells differed significantly between groups, with resting memory CD4+ T cells having the strongest positive correlation with biomarkers. Methylphenidate hydrochloride is a potential therapeutic drug for PIGM . Conclusion Two genes, PIGM and PIGA , were identified as biomarkers related to LRGs in HBV‐ALF, providing a basis for understanding HBV‐ALF pathogenesis.
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