Age-Related Hearing Impairment: Genome and Blood Methylome Data Integration Reveals Candidate Epigenetic Biomarkers

表观遗传学 DNA甲基化 生物 基因组 表观遗传学 遗传学 候选基因 计算生物学 基因 基因表达
作者
Jie Yu,Jingjing Zhu,Hua Zhong,Zicheng Zhang,Jiawen Liu,Xin Lin,Guanghua Zeng,Min Zhang,Chong Wu,Youping Deng,Yanfa Sun,Lang Wu
出处
期刊:Omics A Journal of Integrative Biology [Mary Ann Liebert]
标识
DOI:10.1089/omi.2024.0172
摘要

Age-related hearing impairment (ARHI) is a major planetary health burden that is in need of precision medicine for prevention, diagnosis, and treatment. The present study was set out to identify candidate epigenetic markers for ARHI. Associations of genetically predicted DNA methylation levels with ARHI risk were evaluated using two sets of blood DNA methylation genetic prediction models in 147,997 cases and 575,269 controls of European descent. A total of 1314 CpG sites (CpGs) were significantly associated with ARHI risk at a false discovery rate (FDR) <0.05, including 12 putatively causal CpGs based on fine-mapping analysis. Measured methylation levels of 247 of the associated CpGs were significantly correlated with measured expression levels of 127 nearby genes in blood at an FDR <0.05. A total of 37 CpGs and their 18 nearby genes showed consistent association directions for the methylation-gene expression-ARHI risk pathway. Importantly, three genes (
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