Cardiovascular risk prediction using metabolomic biomarkers and polygenic risk scores: a cohort study and modelling analyses

Abstract Background/Introduction Metabolomic biomarker scores and polygenic risk scores (PRS) have shown promise for improving cardiovascular disease (CVD) prediction, but have not yet been evaluated in the context of current prediction models (SCORE2) and ESC recommendations for 10-year prediction of fatal and non-fatal CVD. Purpose To assess whether metabolomics biomarkers and PRSs can improve 10-year CVD risk prediction when added to SCORE2, and whether improvements are meaningful at ESC 2021 recommended risk thresholds for treatment consideration. Methods Metabolomics biomarker scores were constructed and compared to PRS and SCORE2 in 170,000 UK Biobank participants (5,096 incident CVD cases) aged 40–69 without previous CVD, diabetes, or lipid-lowering treatment. Improvement in risk discrimination when added to SCORE2 was assessed using Harrel’s C-index. Improvement in risk stratification following ESC guideline risk thresholds was assessed using categorical net reclassification. Population modelling was subsequently applied to estimate the impact on CVD prevention if applied at scale. Results Risk discrimination provided by SCORE2 (C-index: 0.718) was similarly improved by addition of metabolomic biomarker scores (ΔC-index: 0.011 [0.009–0.014]) and PRSs (ΔC-index 0.009; [0.007–0.012]). Addition of both metabolomic biomarker scores and PRSs to SCORE2 yielded the largest improvement risk discrimination, with ΔC-index 0.019 (0.016–0.022). Concomitant improvements in risk stratification were observed in categorical net reclassification index, with net case reclassification of 13.04% (11.67–14.41%). Modelling metabolic biomarker scores and PRSs for targeted risk-reclassification increased the number of CVD events prevented per 100,000 screened from 201 to 370 (ΔCVDprevented: 170 [158–182]) while essentially maintaining the number of statins prescribed per CVD event prevented. Conclusions Combining metabolomic biomarker scores and PRSs with SCORE2 moderately enhances prediction of first-onset CVD, and could have substantial population health benefit if applied at scale.