Methanovulcanius yangii gen. nov., sp. nov., a hydrogenotrophic methanogen, isolated from a submarine mud volcano in the offshore area of southwestern Taiwan

生物 16S核糖体RNA 系统发育树 拉伤 产甲烷菌 基因组DNA 核糖体RNA 基因 微生物学 植物 细菌 遗传学 解剖
作者
Hsin-Hsin Chien,Mei‐Chin Lai,Chieh-Yin Weng,Mei-Fei Chen,Sue-Yao Wu,Saulwood Lin,Sheng-Chung Chen
出处
期刊:International Journal of Systematic and Evolutionary Microbiology [Microbiology Society]
卷期号:73 (11) 被引量:4
标识
DOI:10.1099/ijsem.0.006164
摘要

A novel mesophilic, hydrogenotrophic methanogen, strain CYW5 T , was isolated from a sediment sample of a piston core collected from submarine mud volcano MV5 located in the offshore area of southwestern Taiwan. Cells of strain CYW5 T were irregular coccids, 0.5–1.0 µm in diameter and lysed easily by 0.01 % sodium dodecyl sulphate (SDS) treatment. Strain CYW5 T utilized formate or hydrogen plus carbon dioxide as catabolic substrates for methanogenesis. The optimal growth conditions were 37 °C, 0.043–0.085 M NaCl and pH 6.02–7.32. The genomic DNA G+C content calculated from the genome sequence of strain CYW5 T was 56.2 mol%. The results of phylogenetic analysis of 16S rRNA gene sequences indicated that strain CYW5 T represented a member of the family Methanomicrobiaceae in the order Methanomicrobiales , and was closely related to the members of the genus Methanogenium . The most closely related species was Methanogenium cariaci JR1 T (94.9 % of 16S rRNA gene sequence identity). The average nucleotide identity and average amino acid identity values between strain CYW5 T and members of the family Methanomicrobiaceae were 74.7–78.5 % and 49.1–64.9%, respectively. Although many of the morphological and physiological characteristics of strain CYW5 T and the species of the genus Methanogenium were similar, they were distinguishable by the differences in genomic G+C content and temperature, NaCl and pH ranges for growth. Based on these phenotypic, phylogenetic and genomic results, we propose that strain CYW5 T represents a novel species, of a novel genus, named Methanovulcanius yangii gen. nov., sp. nov. The type strain is CYW5 T (=BCRC AR10048 T =DSM 100756 T =NBRC 111404 T ).
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