工作流程
注释
计算机科学
软件
多样性(控制论)
软件工程
数据库
程序设计语言
人工智能
作者
Zoe Alixandra Clarke,Tallulah Andrews,Jawairia Atif,Delaram Pouyabahar,Brendan T. Innes,Sonya A. MacParland,Gary D. Bader
标识
DOI:10.31219/osf.io/ndafw
摘要
Single-cell transcriptomics can profile thousands of cells in a single experiment and identify novel cell types, states and dynamics in a wide variety of tissues and organisms. Standard experimental protocols and analysis workflows have been developed to create single-cell transcriptomic maps from tissues. This tutorial focuses on how to interpret these data to identify cell types, states and other biologically relevant patterns with the objective of creating an annotated map of cells. We recommend a three-step workflow including automatic cell annotation (wherever possible), manual cell annotation and verification. Frequently encountered challenges are discussed, as well as strategies to address them. Guiding principles and specific recommendations for software tools and resources that can be used for each step are covered, and an R notebook is included to help run the recommended workflow. Basic familiarity with computer software is assumed, and basic knowledge of programming (e.g., in the R language) is recommended.
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