Solvation and Hydration of Proteins and Nucleic Acids: A Theoretical View of Simulation and Experiment

化学 溶剂化 核酸 分子动力学 溶剂化壳 计算化学 溶剂模型 隐溶剂化 化学物理 分子 水溶液 氢键 平均力势 力场(虚构)
作者
Vladimir Makarov,B. Montgomery Pettitt,Michael Feig
出处
期刊:ChemInform [Wiley]
卷期号:33 (37) 被引量:1
标识
DOI:10.1002/chin.200237286
摘要

Many theoretical, computational, and experimental techniques recently have been successfully used for description of the solvent distribution around macromolecules. In this Account, we consider recent developments in the areas of protein and nucleic acid solvation and hydration as seen by experiment, theory, and simulations. We find that in most cases not only the general phenomena of solvation but even local hydration patterns are more accurately discussed in the context of water distributions rather than individual molecules of water. While a few localized or highresidency waters are often associated with macromolecules in solution (or crystals from aqueous liquors), these are readily and accurately included in this more general description. The goal of this Account is to review the theoretical models used for the description of the interfacial solvent structure on the border near DNA and protein molecules. In particular, we hope to highlight the progress in this field over the past five years with a focus on comparison of simulation and experimental results.

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