基因组学
生物
计算生物学
非编码DNA
基因组大小
遗传学
DNA测序
基因组
进化生物学
基因
作者
Lei Li,Eugene Goltsman,David Goodstein,Guohong Albert Wu,Daniel S. Rokhsar,John Vogel
标识
DOI:10.1146/annurev-arplant-080720-105454
摘要
A pan-genome is the nonredundant collection of genes and/or DNA sequences in a species. Numerous studies have shown that plant pan-genomes are typically much larger than the genome of any individual and that a sizable fraction of the genes in any individual are present in only some genomes. The construction and interpretation of plant pan-genomes are challenging due to the large size and repetitive content of plant genomes. Most pan-genomes are largely focused on nontransposable element protein coding genes because they are more easily analyzed and defined than noncoding and repetitive sequences. Nevertheless, noncoding and repetitive DNA play important roles in determining the phenotype and genome evolution. Fortunately, it is now feasible to make multiple high-quality genomes that can be used to construct high-resolution pan-genomes that capture all the variation. However, assembling, displaying, and interacting with such high-resolution pan-genomes will require the development of new tools.
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