化学
构象异构
密度泛函理论
两性离子
齿合度
结合能
戒指(化学)
结晶学
计算化学
侧链
螯合作用
配体(生物化学)
立体化学
单独一对
自然键轨道
基准集
分子
无机化学
晶体结构
有机化学
核物理学
生物化学
聚合物
受体
物理
摘要
Binding energies were calculated for the complexes of Na+ and K+ with phenylalanine (Phe), tyrosine (Tyr), and tryptophane (Trp), along with energies of low-energy conformers of the neutral amino acids. Structures were optimized and energies determined by density functional theory (DFT) with the B3LYP functional, using a basis set of 6-31+g(d) on all, or nearly all, heavy atoms. For all but one cation/ligand system, the most energetically favorable binding geometry was the tridentate N/O/Ring chelate. For K+/Trp, however, the advantage of placing the metal ion over the phenyl region of the indole side chain was dominant, leading to a most favored bidentate O/Ring binding geometry. All of the systems, and particularly the Trp systems, have multiple conformers with stabilities within a few kcal mol-1 of the most stable. Zwitterion forms of the complexes were not unreasonable, but were less stable than the normal forms by ∼5 kcal mol-1. To assess the importance of cation−π interactions, conformers were examined in which the side chain was rotated out of chelation. This indicated cation−π stabilization energies of ∼5 kcal mol-1.
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