CircRNA-Phf21a_0002 promotes pyroptosis to aggravate hepatic ischemia/ reperfusion injury by sponging let-7b-5p

上睑下垂 再灌注损伤 缺血 竞争性内源性RNA 下调和上调 小桶 环状RNA 生物 细胞生物学 癌症研究 医学 程序性细胞死亡 基因表达 细胞凋亡 基因 内科学 生物化学 长非编码RNA 转录组
作者
Peng Jiang,Xinqiang Li,Yuntai Shen,Lijian Luo,Bin Wu,Dahong Teng,Jinshan Wang,Muhammad Imran,Qingguo Xu,Shipeng Li,Bin Zhang,Jinzhen Cai
出处
期刊:Heliyon [Elsevier]
卷期号:: e34385-e34385
标识
DOI:10.1016/j.heliyon.2024.e34385
摘要

•By utilizing bioinformatics and sequencing technologies, the expression profile and biological functions of circular RNAs have been elucidated, particularly their role in the competitive endogenous RNA network.•Experimental validation has shown that upregulation of circRNA-Phf21a_0002 exacerbates hepatocellular pyroptosis in an in vitro model of hepatic ischemia-reperfusion injury.•CircRNA-Phf21a_0002 has been shown to modulate pyroptosis by functioning as a ceRNA to sponge let-7b-5p molecules in an in vitro model of hepatic ischemia-reperfusion injury.•Further validation suggests the potential of circRNA-Phf21a_0002 in regulating hepatic ischemia-reperfusion injury through the let-7b-5p/Bach1 network. Hepatic ischemia‒reperfusion injury is a common injury in liver surgery and liver transplantation that can lead to liver function damage, including oxidative stress, apoptosis, autophagy and inflammatory reactions. Pyroptosis is a type of inflammatory programmed cell death that has been implicated in ischemia‒reperfusion injury-associated inflammatory reactions. Although circular RNAs can regulate cell death in hepatic ischemia‒reperfusion injury, their relationship with pyroptosis remains unclear. Therefore, this study aimed to investigate the effect of circular RNA on pyroptosis in hepatic ischemia‒reperfusion injury. We constructed a mouse hepatic ischemia‒reperfusion injury model for circular RNA sequencing and obtained 40 circular RNAs with significant differential expression, of which 39 were upregulated and 1 was downregulated. Subsequently, the endogenous competitive RNA network was constructed using TarBase, miRTarBase, TargetScan, RNAhybrid, and miRanda. Gene Set Enrichment Analysis, Kyoto Encyclopedia of Genes and Genomes and Gene Ontology functional analyses of downstream target genes revealed that circRNA-Phf21a_0002 might affect pyroptosis by regulating the mTOR signaling pathway and Bach1 by sponging let-7b-5p. The overexpression plasmid upregulated the expression of circRNA-Phf21a_0002 in a hypoxia/reoxygenation model, which aggravated pyroptosis in AML12 cells and apoptosis and necrosis of hepatocytes. Next, we investigated the underlying mechanism and found that circRNA-Phf21a_0002 enabled the expression of Bach1 through sponging of let-7b-5p. The aggravation of pyroptosis via overexpression of circRNA-Phf21a_0002 was reversed by let-7b-5p mimics in hypoxia/reoxygenation-subjected AML12 cells. Collectively, our study clarifies that circRNA-Phf21a_0002 aggravates the pyroptosis of hepatocytes related to ischemia-reperfusion by sponging let-7b-5p. These findings provide new molecular mechanisms and novel biomarkers for follow-up treatment. Hepatic ischemia‒reperfusion injury is a common injury in liver surgery and liver transplantation that can lead to liver function damage, including oxidative stress, apoptosis, autophagy and inflammatory reactions. Pyroptosis is a type of inflammatory programmed cell death that has been implicated in ischemia‒reperfusion injury-associated inflammatory reactions. Although circular RNAs can regulate cell death in hepatic ischemia‒reperfusion injury, their relationship with pyroptosis remains unclear. Therefore, this study aimed to investigate the effect of circular RNA on pyroptosis in hepatic ischemia‒reperfusion injury. We constructed a mouse hepatic ischemia‒reperfusion injury model for circular RNA sequencing and obtained 40 circular RNAs with significant differential expression, of which 39 were upregulated and 1 was downregulated. Subsequently, the endogenous competitive RNA network was constructed using TarBase, miRTarBase, TargetScan, RNAhybrid, and miRanda. Gene Set Enrichment Analysis, Kyoto Encyclopedia of Genes and Genomes and Gene Ontology functional analyses of downstream target genes revealed that circRNA-Phf21a_0002 might affect pyroptosis by regulating the mTOR signaling pathway and Bach1 by sponging let-7b-5p. The overexpression plasmid upregulated the expression of circRNA-Phf21a_0002 in a hypoxia/reoxygenation model, which aggravated pyroptosis in AML12 cells and apoptosis and necrosis of hepatocytes. Next, we investigated the underlying mechanism and found that circRNA-Phf21a_0002 enabled the expression of Bach1 through sponging of let-7b-5p. The aggravation of pyroptosis via overexpression of circRNA-Phf21a_0002 was reversed by let-7b-5p mimics in hypoxia/reoxygenation-subjected AML12 cells. Collectively, our study clarifies that circRNA-Phf21a_0002 aggravates the pyroptosis of hepatocytes related to ischemia-reperfusion by sponging let-7b-5p. These findings provide new molecular mechanisms and novel biomarkers for follow-up treatment. ischemia-reperfusion injury gasdermin D circular RNA competing endogenous RNA Gene set enrichment analysis Kyoto Encyclopedia of Genes and Genome Gene Ontology principal component analysis alanine aminotransferase aspartate aminotransferase immunohistochemistry overexpression negative control fluorescence in situ hybridization miRNA response elements biological process cellular component molecular function hypoxia/reoxygenation
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