Identification and verification of ferroptosis‐related genes in diabetic foot using bioinformatics analysis

基因 糖尿病足 免疫系统 医学 基因表达 炎症 生物标志物 发病机制 免疫组织化学 表型 计算生物学 生物信息学 生物 糖尿病 免疫学 遗传学 内分泌学
作者
Xiaoxiang Wang,Shang-Tai Dai,Wenlian Zheng,Wentao Chen,Jiehua Li,Xiaodong Chen,Sitong Zhou,Ronghua Yang
出处
期刊:International Wound Journal [Wiley]
卷期号:20 (8): 3191-3203 被引量:4
标识
DOI:10.1111/iwj.14198
摘要

Abstract Ferroptosis is a novel form of cell death that plays a key role in several diseases, including inflammation and tumours; however, the role of ferroptosis‐related genes in diabetic foot remains unclear. Herein, diabetic foot‐related genes were downloaded from the Gene Expression Omnibus and the ferroptosis database (FerrDb). The least absolute shrinkage and selection operator regression algorithm was used to construct a related risk model, and differentially expressed genes were analysed through immune infiltration. Finally, we identified relevant core genes through a protein–protein interaction network, subsequently verified using immunohistochemistry. Comprehensive analysis showed 198 genes that were differentially expressed during ferroptosis. Based on functional enrichment analysis, these genes were primarily involved in cell response, chemical stimulation, and autophagy. Using the CIBERSORT algorithm, we calculated the immune infiltration of 22 different types of immune cells in diabetic foot and normal tissues. The protein–protein interaction network identified the hub gene TP53, and according to immunohistochemistry, the expression of TP53 was high in diabetic foot tissues but low in normal tissues. Accordingly, we identified the ferroptosis‐related gene TP53 in the diabetic foot, which may play a key role in the pathogenesis of diabetic foot and could be used as a potential biomarker.
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