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PolyA-Bridged Capture Probe Architecture Enables High-Efficiency DNA Hybridization for Multiplex Biosensing Applications

化学 多路复用 生物传感器 纳米技术 DNA DNA–DNA杂交 杂交探针 计算生物学 生物化学 遗传学 材料科学 生物
作者
Jiaqi Yang,Lele Wang,Yanli Wen,Ruiyan Guo,Yinbo Huo,Haoran Zhao,Lanying Li,Juan Yan,Gang Liu
出处
期刊:Analytical Chemistry [American Chemical Society]
标识
DOI:10.1021/acs.analchem.5c01752
摘要

DNA target-probe hybridization is a critical recognition and combination process for establishing high-performance biosensors. However, in conventional self-assembly strategies, surface-anchored capture probes exhibit heterogeneous molecular conformations and limit the kinetics of DNA hybridization at the interface. As a result, the response speed and practicability of electrochemical biosensors are quite limited, especially in real samples. Interfacial regulation of the molecular conformation using artificial DNA nanostructures has been widely recognized as a promising strategy to improve the accessibility and activity of capture probes. This study introduces a significantly simplified molecular regulatory structure on the surface of the gold electrode consisting of a probe-polyA-probe (PAP) sequence and a capture probe (CP). The PAP sequence has a central polyA fragment anchoring to the gold electrode and two flanking probes for hybridization with the two ends of the capture probe, forming a bridged CP (BCP). Upon dual-terminal hybridization with PAP, the capture probe underwent structural linearization through opposing directional extension, thereby markedly enhancing the steric accessibility and subsequent hybridization efficiency. By establishing a BCP biosensor, we achieved rapid and sensitive detection of DNA hybridization from 1 fM to 1 nM. More importantly, the platform demonstrated valuable versatility in the construction of both a gap hybridization biosensor for microRNA and a DNAzyme biosensor for Pb2+. The BCP biosensor exhibited exceptional biorecognition capability, achieving rapid DNA hybridization kinetics in only 3 min and a remarkable hybridization efficiency of 95.56%. Based on its high sensitivity, operational simplicity, and broad applicability, our BCP biosensor has shown an avenue for the development of novel electrochemical biosensors for molecular diagnostics and environmental monitoring.

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