Abstract This study reports the successful fabrication of complex 3D metal nanoparticle–polymer nanocomposites using two‐photon polymerization (2PP). Three complementary strategies are detailed: in situ formation of metal nanoparticles (MeNPs) through a single‐step photoreduction process, integration of pre‐formed MeNPs into 2PP resin, and site‐selective MeNPs decoration of 3D 2PP structures. In the in situ formation strategy, a phase‐transfer method is applied to transfer silver and copper ions from an aqueous phase into a toluene solvent to disperse them in photoreactive monomers.The addition of a photosensitive dye, coumarin 30, facilitated the reduction of silver ions and improved the distribution of silver nanoparticles (AgNPs). This strategy is successfully used to produce other MeNPs, such as Cu and Au. The integration of pre‐formed MeNPs enabled highly controlled NP size distribution within the 2PP 3D structures with high‐fidelity To enable selective decoration of 2PP 3D surfaces with MeNPs, a multimaterial strategy is developed, with one of the resins designed for thiol‐ene reaction, which demonstrated selective binding to AuNPs. The successful development of complementary strategies for integration of MeNPs into 2PP resins offers exciting opportunities for fabrication of MeNP composites with sub‐micron resolution for applications from photonics to metamaterials and drug delivery.