Design, synthesis, and biological evaluation of benzo[d]imidazole-2-carboxamides as new anti-TB agents

The benzo[ d ]imidazole-2-carboxamide scaffold has been identified as novel anti-TB chemotype with thirteen new hits synthesized through the new and environment friendly methodology. • Benzo[ d ]imidazole-2-carboxamides has been designed as new anti-TB chemotype. • Thirteen hits with MIC values of 0.78–6.25 µg/mL. • All active compounds are non-cytotoxic. • Most potent compounds with MIC value of 0.78 µg/mL and selectivity index > 60. • Active compounds with favorable Lipinski/higher LipE demonstrated drug likeliness. Tuberculosis is the leading cause of death globally among infectious diseases. Due to the development of resistance of Mycobacterium tuberculosis to currently used anti-TB medicines and the TB-HIV synergism the urgent need to develop novel anti-mycobacterial agents has been realized. The drug-to-target path has been the successful strategy for new anti-TB drug development. All the six drug candidates that have shown promise during the clinical trials and some of these being approved for treatment against MDR TB are the results of phenotype screening of small molecule compound libraries. In search of compounds belonging to novel pharmacophoric class that could be subjected to whole cell assay to generate new anti-TB leads the benzo[ d ]imidazole-2-carboxamide moiety has been designed as a novel anti-TB scaffold. The design was based on the identification of the benzimidazole ring as a prominent substructure of the FDA approved drugs, the structural analysis of reported anti-TB benzimidazoles, and the presence of the C-2 carboxamido functionality in novel bioisoteric anti-TB benzothiazoles. Twenty seven final compounds have been prepared via NH 4 Cl-catalyzed amidation of ethyl benzo[ d ]imidazole-2-carboxylates, as the required intermediates, obtained through a green “all water” one-pot synthetic route following a tandem N -arylation-reduction-cyclocondensation procedure. All of the synthesised target compounds were assessed for anti-TB potential using H 37 Rv ATCC27294 strain. Thirteen compounds were found with better MIC (0.78–6.25 µg/mL) than the standard drugs and being non-cytotoxic nature (<50% inhibition against RAW 264.7 cell lines at 50 µg/mL). The compound 8e exhibited best anti-TB activity (MIC: 2.15 µM and selectivity index: > 60) and a few others e.g., 8a , 8f , 8 k and 8o are the next best anti-TB hits (MIC: 1.56 µg/mL). The determination and analysis of various physiochemical parameters revealed favorable druglike properties of the active compounds. The compounds 8a - l and 8o , with MIC values of ≤ 6.25 μg/mL, have high LipE values (10.66–11.77) that are higher than that of the suggested value of > 6 derived from empirical evidence for quality drug candidates and highlight their therapeutic potential. The highest LipE value of 11.77 of the best active compound 8e with the MIC of 0.78 μg/mL indicates its better absorption and clearance as a probable clinical candidate for anti-TB drug discovery. These findings highlight the discovery of benzimidazole-2-carboxamides for further development as new anti-TB agents.