系统基因组学
系统发育树
进化生物学
生物
基因组
推论
生命之树(生物学)
基因组学
系统发育学
树(集合论)
比较基因组学
分类学
计算生物学
计算机科学
生态学
基因
人工智能
分类学(生物学)
遗传学
克莱德
数学分析
数学
作者
José Salvatore Leister Patané,Joaquim Martins,João Carlos Setúbal
出处
期刊:Methods in molecular biology
日期:2024-01-01
卷期号:: 267-345
标识
DOI:10.1007/978-1-0716-3838-5_11
摘要
Phylogenomics aims at reconstructing the evolutionary histories of organisms taking into account whole genomes or large fractions of genomes. Phylogenomics has significant applications in fields such as evolutionary biology, systematics, comparative genomics, and conservation genetics, providing valuable insights into the origins and relationships of species and contributing to our understanding of biological diversity and evolution. This chapter surveys phylogenetic concepts and methods aimed at both gene tree and species tree reconstruction while also addressing common pitfalls, providing references to relevant computer programs. A practical phylogenomic analysis example including bacterial genomes is presented at the end of the chapter.
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