化学
DNA糖基化酶
碱基对
DNA
背景(考古学)
穆提
鸟嘌呤
DNA损伤
核苷酸
生物化学
基因
生物
古生物学
作者
Sergey S. Ovcherenko,Аndrey V. Shernyukov,Dmitry M. Nasonov,Anton V. Endutkin,Dmitry O. Zharkov,Elena G. Bagryanskaya
摘要
8-Oxo-7,8-dihydroguanine (oxoG), an abundant DNA lesion, can mispair with adenine and induce mutations. To prevent this, cells possess DNA repair glycosylases that excise either oxoG from oxoG:C pairs (bacterial Fpg, human OGG1) or A from oxoG:A mispairs (bacterial MutY, human MUTYH). Early lesion recognition steps remain murky and may include enforced base pair opening or capture of a spontaneously opened pair. We adapted the CLEANEX-PM NMR protocol to detect DNA imino proton exchange and analyzed the dynamics of oxoG:C, oxoG:A, and their undamaged counterparts in nucleotide contexts with different stacking energy. Even in a poorly stacking context, the oxoG:C pair did not open easier than G:C, arguing against extrahelical base capture by Fpg/OGG1. On the contrary, oxoG opposite A significantly populated the extrahelical state, which may assist recognition by MutY/MUTYH.
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