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Identification and validation of cuproptosis‐related molecular clusters in non‐alcoholic fatty liver disease

脂肪肝 列线图 疾病 计算生物学 基因 生物 基因表达谱 基因表达 聚类分析 慢性肝病 生物信息学 遗传学 医学 计算机科学 内科学 人工智能 肝硬化
作者
Changxu Liu,Z Fang,Kai Yang,Yan-chao Ji,Xiaoxiao Yu,Zheng Guo,Zhichao Dong,Tong Zhu,Chang Liu
出处
期刊:Journal of Cellular and Molecular Medicine [Wiley]
标识
DOI:10.1111/jcmm.18091
摘要

Abstract Non‐alcoholic fatty liver disease (NAFLD) is a major chronic liver disease worldwide. Cuproptosis has recently been reported as a form of cell death that appears to drive the progression of a variety of diseases. This study aimed to explore cuproptosis‐related molecular clusters and construct a prediction model. The gene expression profiles were obtained from the Gene Expression Omnibus (GEO) database. The associations between molecular clusters of cuproptosis‐related genes and immune cell infiltration were investigated using 50 NAFLD samples. Furthermore, cluster‐specific differentially expressed genes were identified by the WGCNA algorithm. External datasets were used to verify and screen feature genes, and nomograms, calibration curves and decision curve analysis (DCA) were performed to verify the performance of the prediction model. Finally, a NAFLD‐diet mouse model was constructed to further verify the predictive analysis, thus providing new insights into the prediction of NAFLD clusters and risks. The role of cuproptosis in the development of non‐alcoholic fatty liver disease and immune cell infiltration was explored. Non‐alcoholic fatty liver disease was divided into two cuproptosis‐related molecular clusters by unsupervised clustering. Three characteristic genes (ENO3, SLC16A1 and LEPR) were selected by machine learning and external data set validation. In addition, the accuracy of the nomogram, calibration curve and decision curve analysis in predicting NAFLD clusters was also verified. Further animal and cell experiments confirmed the difference in their expression in the NAFLD mouse model and Mouse hepatocyte cell line. The present study explored the relationship between non‐alcoholic fatty liver disease and cuproptosis, providing new ideas and targets for individual treatment of the disease.
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