Potential biomarkers of acute myocardial infarction based on the composition of the blood microbiome

微生物群 小桶 医学 UniFrac公司 拟杆菌 Β-变形菌 计算生物学 α多样性 内科学 16S核糖体RNA 遗传学 生物信息学 生态学 转录组 物种多样性 生物 基因 细菌 放线菌门 基因表达
作者
R Z Chen,Yiheng Ye,Yali Ding,Zhidong Wan,Xinyu Ye,Jun Liu
出处
期刊:Clinica Chimica Acta [Elsevier BV]
卷期号:556: 117843-117843 被引量:1
标识
DOI:10.1016/j.cca.2024.117843
摘要

It is difficult to distinguish between acute myocardial infarction (AMI) and unstable angina (UA) due to their similar clinical features. In recent years, studies have shown that microbiomes have great potential in distinguishing diseases. The purpose of this study is to describe the composition of serum microbiome in the AMI and UA by 16S rDNA sequencing. Based on the high-throughput detection platform and 16S rDNA amplification sequencing technology, this study detected the blood microbial composition of 55 patients with AMI and 62 patients with UA. Alpha diversity and Beta diversity analysis were used to compare the differences in microbial composition and bacterial colony structure between AMI and UA groups. We perform PCoA (Principal Co-ordinates Analysis) based on Unweighted Unifrac distance. In addition, various statistical methods were employed to examine the significance of differences in microbial composition and genus between the two groups. PICRUSt (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) was employed to predict KEGG (Kyoto Encyclopedia of Genes and Genomes) function from 16S sequencing data. Random forest was applied to identify biomarkers and construct the diagnostic model. Subsequently, the stability of the model was verified by 10-fold cross and the diagnostic effectiveness was evaluated through ROC (Receiver Operating Characteristic). In this study, we found that alpha diversity index of serum microbiome in AMI group was significantly higher than in UA group. T-test analysis demonstrated that the UA group presented a higher abundance of Ralstonia, Faecalibaculum and Gammaproteobacteria, while Bacteroides, Sphingomonas, Faecalibaculum, Haemophilus, Serratia, Bifidobacterium and Chloroplast were more abundant in the AMI group. The LefSe (LDA Effect Size) analysis showed that the Gammaproteobacteria, Proteobacteria, Ralstonia pickettli, Ralstonia, Burkholderiaceae and Burkholderiales were enriched in UA group, and Bacteroidales, Bacteroidia, Bacteroidota, Clostridia and Firmicutes were more abundant in the AMI group. Ten bacterial diagnostic models were constructed in the random forest. The area under the curve (AUC) in the training set was 88.01%, and the AUC value in the test set was 95.04%. In this study, the composition of blood microorganisms in the groups of patients with AMI and UA has been analyzed, providing novel insights for understanding the pathogenesis of AMI; Blood microbiome may serve as novel diagnostic biomarkers of AMI.

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
lingerzn完成签到,获得积分10
1秒前
1秒前
Qi发布了新的文献求助10
2秒前
OuyueZhang发布了新的文献求助10
3秒前
3秒前
3秒前
泥酱完成签到,获得积分10
3秒前
wangkuo发布了新的文献求助10
3秒前
开放巧荷发布了新的文献求助10
4秒前
cdercder发布了新的文献求助10
5秒前
狄烁发布了新的文献求助20
5秒前
大个应助whh采纳,获得10
5秒前
5秒前
闪闪乌龟完成签到,获得积分10
6秒前
Owen应助Aimee采纳,获得10
6秒前
Moon发布了新的文献求助10
7秒前
7秒前
7秒前
7秒前
juicy香菜完成签到,获得积分20
8秒前
123完成签到,获得积分20
8秒前
8秒前
9秒前
LIN发布了新的文献求助10
9秒前
10秒前
完美世界应助小李子采纳,获得20
10秒前
徐sir发布了新的文献求助10
10秒前
优雅亦丝完成签到 ,获得积分10
10秒前
11秒前
紫紫发布了新的文献求助10
11秒前
11秒前
12秒前
今后应助罗梦采纳,获得10
12秒前
小白完成签到,获得积分10
12秒前
我是老大应助juicy香菜采纳,获得10
13秒前
13秒前
13秒前
13秒前
沉淀发布了新的文献求助30
14秒前
hulahula发布了新的文献求助10
14秒前
高分求助中
Principles of Economics, 11th Edition 10000
University Physics with Modern Physics, 16th edition 10000
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Environmental Leverage in Times of Climate Crisis: Product Standards, Carbon Border Measures and Preferential Trade Agreements 1000
Matrix Methods in Data Mining and Pattern Recognition 510
Social Skills Improvement System-Rating Scales--Chinese Version 500
Dynamische Polarisation von H-1 und B-11 in (CH-3)-3NBH-3 500
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 工程类 有机化学 化学工程 生物化学 计算机科学 内科学 物理 复合材料 催化作用 细胞生物学 无机化学 光电子学 物理化学 电极 基因
热门帖子
关注 科研通微信公众号,转发送积分 7217554
求助须知:如何正确求助?哪些是违规求助? 8848927
关于积分的说明 18673708
捐赠科研通 6874248
什么是DOI,文献DOI怎么找? 3185521
关于科研通互助平台的介绍 2347821
邀请新用户注册赠送积分活动 2159820