Insights into the coordination chemistry of antineoplastic doxorubicin with 3d-transition metal ions Zn2+, Cu2+, and VO2+: a study using well-calibrated thermodynamic cycles and chemical interaction quantum chemistry models

溶剂化 化学 分子内力 化学稳定性 计算化学 超分子化学 配位复合体 离子 吉布斯自由能 水溶液中的金属离子 过渡金属 化学物理 分子 热力学 金属 有机化学 物理 催化作用
作者
Julieta Reyna-Luna,Luis Soriano‐Agueda,Christian Jardínez,Marco Franco‐Pérez
出处
期刊:Journal of Computer-aided Molecular Design [Springer Science+Business Media]
卷期号:37 (7): 279-299
标识
DOI:10.1007/s10822-023-00506-4
摘要

We present a computational strategy based on thermodynamic cycles to predict and describe the chemical equilibrium between the 3d-transition metal ions Zn2+, Cu2+, and VO2+ and the widely used antineoplastic drug doxorubicin. Our method involves benchmarking a theoretical protocol to compute gas-phase quantities using DLPNO Coupled-Cluster calculations as reference, followed by estimating solvation contributions to the reaction Gibbs free energies using both explicit partial (micro)solvation steps for charged solutes and neutral coordination complexes, as well as a continuum solvation procedure for all solutes involved in the complexation process. We rationalized the stability of these doxorubicin-metal complexes by inspecting quantities obtained from the topology of their electron densities, particularly the bond critical points and non-covalent interaction index. Our approach allowed us to identify representative species in solution phase, infer the most likely complexation process for each case, and identify key intramolecular interactions involved in the stability of these compounds. To the best of our knowledge, this is the first study reporting thermodynamic constants for the complexation of doxorubicin with transition metal ions. Unlike other methods, our procedure is computationally affordable for medium-sized systems and provides valuable insights even with limited experimental data. Furthermore, it can be extended to describe the complexation process between 3d-transition metal ions and other bioactive ligands.

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
上官若男的应助被科研通管家采纳,获得10
刚刚
羽候未已完成签到,获得积分10
刚刚
bkagyin的应助被科研通管家采纳,获得10
刚刚
大个的应助被科研通管家采纳,获得10
刚刚
CipherSage的应助被科研通管家采纳,获得10
1秒前
酷波er的应助被科研通管家采纳,获得10
1秒前
1秒前
song发布了新的文献求助10
1秒前
上学威龙发布了新的文献求助10
1秒前
Ting完成签到 ,获得积分10
1秒前
JamesPei的应助被Viiv采纳,获得10
1秒前
2秒前
2秒前
avanti完成签到,获得积分10
2秒前
传奇3的应助被鎓离子采纳,获得10
3秒前
4秒前
十七完成签到 ,获得积分10
5秒前
camelots完成签到,获得积分10
5秒前
6秒前
6秒前
ljr发布了新的文献求助10
6秒前
凝心发布了新的文献求助10
7秒前
CChi0923完成签到,获得积分10
7秒前
酷波er的应助被lan采纳,获得10
8秒前
屿杓发布了新的文献求助10
8秒前
9秒前
9秒前
张子怡完成签到,获得积分10
9秒前
10秒前
星辰大海的应助被sthess采纳,获得10
10秒前
慕青的应助被sthess采纳,获得10
10秒前
于东升发布了新的文献求助20
10秒前
11秒前
11秒前
天玄发布了新的文献求助10
11秒前
kingz发布了新的文献求助10
12秒前
13秒前
浩宁发布了新的文献求助10
13秒前
13秒前
英俊的铭的应助被nuannuan采纳,获得10
13秒前
高分求助中
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Encyclopedia of Reagents for Organic Synthesis, 14 Volume Set, 2nd Edition(本书共14册,本求助8volume-14volume共7册,独立harcover版本,非网络版本e-EROS 版,不能网络版转化PDF或提取PDF) 2000
Aspects of Post-SPE Phonology 2000
Nanocomposite Removal of Pesticides from Wastewater 1500
Practical Manual of Forensic Psychophysiology: Methodology, Execution, and Fields of Application 800
Berberine regulates the TLR4 signaling pathway to suppress hypoxia-induced proliferation and migration of pulmonary arterial smooth muscle cells 520
Organizational Behavior 510
热门求助领域 (近24小时)
化学 材料科学 医学 生物 计算机科学 工程类 纳米技术 有机化学 物理 生物化学 化学工程 内科学 复合材料 催化作用 心理学 人工智能 细胞生物学 光电子学 无机化学 量子力学
热门帖子
关注 科研通微信公众号,转发送积分 7921862
求助须知:如何正确求助?哪些是违规求助? 9418153
关于积分的说明 20929868
捐赠科研通 7517809
什么是DOI,文献DOI怎么找? 3364373
关于科研通互助平台的介绍 2501480
邀请新用户注册赠送积分活动 2395611