Network pharmacology and experimental verification based research into the effect and mechanism of Aucklandiae Radix–Amomi Fructus against gastric cancer

小桶 系统药理学 计算生物学 药物数据库 自动停靠 AKT1型 基因本体论 生物 PI3K/AKT/mTOR通路 信号转导 数据库 计算机科学 药理学 生物信息学 基因 基因表达 生物化学 药品
作者
Siyuan Song,Jiayu Zhou,Ye Li,Jiatong Liu,Jingzhan Li,Ping Shu
出处
期刊:Scientific Reports [Nature Portfolio]
卷期号:12 (1) 被引量:13
标识
DOI:10.1038/s41598-022-13223-z
摘要

To investigate the mechanism of the Aucklandiae Radix-Amomi Fructus (AR-AF) herb pair in treating gastric cancer (GC) by using network pharmacology and experimental verification. Using the traditional Chinese medicine system pharmacology database and analysis platform (TCMSP), the major active components and their corresponding targets were estimated and screened out. Using Cytoscape 3.7.2 software, a visual network was established using the active components of AR-AF and the targets of GC. Based on STRING online database, the protein interaction network of vital targets was built and analyzed. With the Database for Annotation, Visualization, and Integrated Discovery (DAVID) server, the gene ontology (GO) biological processes and the Kyoto Encyclopedia of Genes and Genomes (KEGG) signaling pathways of the target enrichment were performed. AutoDock Vina was used to perform molecular docking and calculate the binding affinity. The mRNA and protein expression levels of the hub targets were analyzed by the Oncomine, GEPIA, HPA databases and TIMER online tool, and the predicted targets were verified by qRT-PCR in vitro. Eremanthin, cynaropicrin, and aceteugenol were identified as vital active compounds, and AKT1, MAPK3, IL6, MAPK1, as well as EGFR were considered as the major targets. These targets exerted therapeutic effects on GC by regulating the cAMP signaling pathway, and PI3K-Akt signaling pathway. Molecular docking revealed that these active compounds and targets showed good binding interactions. The validation in different databases showed that most of the results were consistent with this paper. The experimental results confirmed that eremanthin could inhibit the proliferation of AGS by reducing the mRNA expression of hub targets. As predicted by network pharmacology and validated by the experimental results, AR-AF exerts antitumor effects through multiple components, targets, and pathways, thereby providing novel ideas and clues for the development of preparations and the treatment of GC.

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
江晚发布了新的文献求助10
3秒前
852应助mizhou采纳,获得10
4秒前
Fan完成签到,获得积分10
6秒前
7秒前
蔡从安发布了新的文献求助10
8秒前
科研通AI2S应助沐风采纳,获得10
10秒前
健忘的晓小完成签到 ,获得积分10
11秒前
Janus完成签到 ,获得积分10
14秒前
韶可愁完成签到,获得积分10
18秒前
糖宝完成签到 ,获得积分0
27秒前
Pauline完成签到 ,获得积分0
27秒前
光亮向真完成签到,获得积分10
28秒前
昔昔完成签到 ,获得积分10
30秒前
jinyu完成签到,获得积分10
30秒前
贤惠的早晨完成签到,获得积分10
31秒前
懵懂的书本完成签到 ,获得积分10
32秒前
爱科研的小虞完成签到 ,获得积分10
35秒前
黄梓同完成签到 ,获得积分10
35秒前
38秒前
哭泣青烟完成签到 ,获得积分10
39秒前
胡杨树2006完成签到,获得积分10
41秒前
天天发布了新的文献求助10
41秒前
Tracy麦子完成签到 ,获得积分10
53秒前
张大旭77完成签到 ,获得积分10
56秒前
会飞的螃蟹完成签到,获得积分10
56秒前
满意的寒凝完成签到 ,获得积分10
1分钟前
刻苦的新烟完成签到 ,获得积分0
1分钟前
过时的傲玉完成签到 ,获得积分10
1分钟前
lichunrong完成签到,获得积分10
1分钟前
笨笨的乘风完成签到 ,获得积分10
1分钟前
111完成签到 ,获得积分10
1分钟前
lili完成签到,获得积分10
1分钟前
loren313完成签到,获得积分0
1分钟前
MelonSeed完成签到,获得积分10
1分钟前
ccx关闭了ccx文献求助
1分钟前
妙海完成签到,获得积分10
1分钟前
世上僅有的榮光之路完成签到,获得积分0
1分钟前
蔡从安发布了新的文献求助10
1分钟前
ybheart完成签到,获得积分10
1分钟前
大猪完成签到 ,获得积分10
1分钟前
高分求助中
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
PowerCascade: A Synthetic Dataset for Cascading Failure Analysis in Power Systems 2000
Various Faces of Animal Metaphor in English and Polish 800
Signals, Systems, and Signal Processing 610
Photodetectors: From Ultraviolet to Infrared 500
On the Dragon Seas, a sailor's adventures in the far east 500
Yangtze Reminiscences. Some Notes And Recollections Of Service With The China Navigation Company Ltd., 1925-1939 500
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 工程类 有机化学 化学工程 生物化学 计算机科学 物理 内科学 复合材料 催化作用 物理化学 光电子学 电极 细胞生物学 基因 无机化学
热门帖子
关注 科研通微信公众号,转发送积分 6353195
求助须知:如何正确求助?哪些是违规求助? 8168047
关于积分的说明 17191522
捐赠科研通 5409215
什么是DOI,文献DOI怎么找? 2863646
邀请新用户注册赠送积分活动 1840978
关于科研通互助平台的介绍 1689834