Network pharmacology and experimental verification based research into the effect and mechanism of Aucklandiae Radix–Amomi Fructus against gastric cancer

小桶 系统药理学 计算生物学 药物数据库 自动停靠 AKT1型 基因本体论 生物 PI3K/AKT/mTOR通路 信号转导 数据库 计算机科学 药理学 生物信息学 基因 基因表达 生物化学 药品
作者
Siyuan Song,Jiayu Zhou,Ye Li,Jiatong Liu,Jingzhan Li,Ping Shu
出处
期刊:Scientific Reports [Nature Portfolio]
卷期号:12 (1) 被引量:13
标识
DOI:10.1038/s41598-022-13223-z
摘要

To investigate the mechanism of the Aucklandiae Radix-Amomi Fructus (AR-AF) herb pair in treating gastric cancer (GC) by using network pharmacology and experimental verification. Using the traditional Chinese medicine system pharmacology database and analysis platform (TCMSP), the major active components and their corresponding targets were estimated and screened out. Using Cytoscape 3.7.2 software, a visual network was established using the active components of AR-AF and the targets of GC. Based on STRING online database, the protein interaction network of vital targets was built and analyzed. With the Database for Annotation, Visualization, and Integrated Discovery (DAVID) server, the gene ontology (GO) biological processes and the Kyoto Encyclopedia of Genes and Genomes (KEGG) signaling pathways of the target enrichment were performed. AutoDock Vina was used to perform molecular docking and calculate the binding affinity. The mRNA and protein expression levels of the hub targets were analyzed by the Oncomine, GEPIA, HPA databases and TIMER online tool, and the predicted targets were verified by qRT-PCR in vitro. Eremanthin, cynaropicrin, and aceteugenol were identified as vital active compounds, and AKT1, MAPK3, IL6, MAPK1, as well as EGFR were considered as the major targets. These targets exerted therapeutic effects on GC by regulating the cAMP signaling pathway, and PI3K-Akt signaling pathway. Molecular docking revealed that these active compounds and targets showed good binding interactions. The validation in different databases showed that most of the results were consistent with this paper. The experimental results confirmed that eremanthin could inhibit the proliferation of AGS by reducing the mRNA expression of hub targets. As predicted by network pharmacology and validated by the experimental results, AR-AF exerts antitumor effects through multiple components, targets, and pathways, thereby providing novel ideas and clues for the development of preparations and the treatment of GC.

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
刚刚
刚刚
1秒前
2秒前
赘婿应助阳光的八宝粥采纳,获得10
3秒前
发如雪发布了新的文献求助10
3秒前
糖糖发布了新的文献求助10
4秒前
4秒前
稳重的半梅完成签到 ,获得积分10
4秒前
6秒前
7秒前
7秒前
7秒前
英俊的铭应助科研通管家采纳,获得10
7秒前
7秒前
小蘑菇应助科研通管家采纳,获得10
7秒前
7秒前
7秒前
领导范儿应助科研通管家采纳,获得10
8秒前
梨花月应助科研通管家采纳,获得10
8秒前
乐乐应助科研通管家采纳,获得10
8秒前
搜集达人应助科研通管家采纳,获得10
8秒前
香蕉觅云应助科研通管家采纳,获得10
8秒前
8秒前
三三三发布了新的文献求助10
8秒前
传奇3应助宇文半邪采纳,获得10
8秒前
所所应助李子采纳,获得10
9秒前
王诗涵完成签到,获得积分20
9秒前
9秒前
无花果应助songlai_采纳,获得10
11秒前
11秒前
JamesPei应助俭朴的飞松采纳,获得10
11秒前
12秒前
jjyna发布了新的文献求助10
12秒前
caixk发布了新的文献求助10
12秒前
13秒前
赘婿应助洼地的浮游生物采纳,获得10
13秒前
13秒前
15秒前
16秒前
高分求助中
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Developing Genetic Editing Tools for Lysobacter 2000
Моделирование процессов самоорганизации в кристаллообразующих системах 1000
Adhesion Science: Principles & Practice 800
Signals, Systems, and Signal Processing 610
IEST-RP-CC018: Cleanroom Cleaning and Sanitization: Operating and Monitoring Procedures 600
Fundamentals of Pharmaceutical and Biologics Regulations: A Global Perspective, Second Edition 600
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 工程类 有机化学 化学工程 生物化学 计算机科学 物理 内科学 复合材料 催化作用 物理化学 光电子学 电极 细胞生物学 基因 无机化学
热门帖子
关注 科研通微信公众号,转发送积分 6526862
求助须知:如何正确求助?哪些是违规求助? 8319891
关于积分的说明 17809182
捐赠科研通 5628475
什么是DOI,文献DOI怎么找? 2929877
邀请新用户注册赠送积分活动 1906608
关于科研通互助平台的介绍 1766148