Genetic architecture of seed glycerolipids in Asian cultivated rice

生物 数量性状位点 粳稻 淀粉 基因座(遗传学) 遗传变异 植物 基因 遗传学 生物化学
作者
Jun Hong,Leah Rosental,Yang Xu,Dawei Xu,Isabel Orf,Wengsheng Wang,Zhiqiang Hu,Su Su,Shaoxing Bai,M. M. Ashraf,Chaoyang Hu,Changquan Zhang,Zhikang Li,Jianlong Xu,Qiaoquan Liu,Hui Zhang,Fengli Zhang,Zhijing Luo,Mingjiao Chen,Xiaofei Chen,Natalie S. Betts,Alisdair R. Fernie,Wanqi Liang,Guanqun Chen,Yariv Brotman,Dabing Zhang,Jianxin Shi
出处
期刊:Plant Cell and Environment [Wiley]
卷期号:46 (4): 1278-1294 被引量:12
标识
DOI:10.1111/pce.14378
摘要

Abstract Glycerolipids are essential for rice development and grain quality but its genetic regulation remains unknown. Here we report its genetic base using metabolite‐based genome‐wide association study and metabolite‐based quantitative traits locus (QTL) analyses based on lipidomic profiles of seeds from 587 Asian cultivated rice accessions and 103 chromosomal segment substitution lines, respectively. We found that two genes encoding phosphatidylcholine (PC):diacylglycerol cholinephosphotransferase (OsLP1) and granule‐bound starch synthase I (Waxy) contribute to variations in saturated triacylglycerol (TAG) and lyso‐PC contents, respectively. We demonstrated that allelic variation in OsLP1 sequence between indica and japonica results in different enzymatic preference for substrate PC‐16:0/16:0 and different saturated TAG levels. Further evidence demonstrated that OsLP1 also affects heading date, and that co‐selection of OsLP1 and a flooding‐tolerant QTL in Aus results in the abundance of saturated TAGs associated with flooding tolerance. Moreover, we revealed that the sequence polymorphisms in Waxy has pleiotropic effects on lyso‐PC and amylose content. We proposed that rice seed glycerolipids have been unintentionally shaped during natural and artificial selection for adaptive or import seed quality traits. Collectively, our findings provide valuable genetic resources for rice improvement and evolutionary insights into seed glycerolipid variations in rice.
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