Confining selenium in porous carbon hosts is an effective strategy to improve the performance of Li–Se batteries. The structure of confined Se and the corresponding lithiation mechanism remain to be clarified yet. In this work, [email protected] composite material was prepared based on hierarchical porous carbon CISC-58 with same content of mesopores and micropores, and then used for cathode material of Li–Se batteries. The selenium loaded in [email protected] takes Sex chain structure rather than the cyclic Se8, as evidenced by both 77Se MAS NMR and EPR experiments. In particular, the free radical signals in EPR changes adaptively with the discharge-charge cycling. Ex-stiu EPR and in-stiu 7Li NMR techniques further confirmed the stepwise reaction mechanism of Sex chains in the carbonate-based electrolytes. To better understand the discharge process of selenium, NMR in combination with DFT calculations are utilized to assign the polyselenides engaged in discharge process. We have found that polyselenides represented by Li2Se2 were generated during the discharge of selenium in the carbonate-based electrolytes.