The development of portable and efficient nanoprobes to realize the quantitative/qualitative onsite determination of food pollutants is of immense importance for safeguarding human health and food safety. With the advent of the smartphone, the digital imaging property causes it to be an ideal diagnostic substrate to point-of-care analysis probes. Besides, merging the versatility of carbon dots nanostructures and bioreceptor abilities has opened an innovative assortment of construction blocks to design advanced nanoprobes or improving those existing ones. On this ground, massive endeavors have been made to combine mobile phones with smart nanomaterials to produce portable (bio)sensors in a reliable, low cost, rapid, and even facile-to-implement area with inadequate resources. Herein, this work outlines the latest advancement of carbon dots nanostructures on smartphone for onsite detecting of agri-food pollutants. Particularly, we afford a summary of numerous approaches applied for target molecule diagnosis (pesticides, mycotoxins, pathogens, antibiotics, and metal ions), for instance microscopic imaging, fluorescence, colorimetric, and electrochemical techniques. Authors tried to list those scaffolds that are well-recognized in complex media or those using novel constructions/techniques. Lastly, we also point out some challenges and appealing prospects related to the enhancement of high-efficiency smartphone based carbon dots systems.